BLASTN 2.2.3 [May-13-2002]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FJ0AC40ZA09FM1.SCF screened BAC_end
         (984 letters)

Database: Klactis 3X assemblage 11/02 
           1807 sequences; 10,358,551 total letters

Searching....done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

3x_Contig1787                                                        1156   0.0  

>3x_Contig1787 
          Length = 34189

 Score = 1156 bits (583), Expect = 0.0
 Identities = 666/687 (96%), Gaps = 5/687 (0%)
 Strand = Plus / Plus

                                                                         
Query: 84    tgcaaaccgattcttgaagttagtggaacaataggggcatatcatctcaaagttcttgat 143
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 25526 tgcaaaccgattcttgaagttagtggaacaataggggcatatcatctcaaagttcttgat 25585

                                                                         
Query: 144   atacctttcggatagctccttgtcaccaggcaagtccaacacaggtagttcatcccatgg 203
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 25586 atacctttcggatagctccttgtcaccaggcaagtccaacacaggtagttcatcccatgg 25645

                                                                         
Query: 204   tataaagaacggggttttgaaagagttgaaatgctttttgtgctttaatttcttactatg 263
             ||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 25646 tataaagaacggggagttgaaagagttgaaatgctttttgtgctttaatttcttactatg 25705

                                                                         
Query: 264   gaaatctcttgtcatgacatgtatatgtgtattagccattgatggagtgctatgtactcc 323
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 25706 gaaatctcttgtcatgacatgtatatgtgtattagccattgatggagtgctatgtactcc 25765

                                                                         
Query: 324   tgattggacaaaattcgccaagaaagcttctttctctttcaaggatatatcttttatgtc 383
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 25766 tgattggacaaaattcgccaagaaagcttctttctctttcaaggatatatcttttatgtc 25825

                                                                         
Query: 384   atatttttttatgaattgagtccaacagaatcgtttagcccaatcaatatgccattgaag 443
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 25826 atatttttttatgaattgagtccaacagaatcgtttagcccaatcaatatgccattgaag 25885

                                                                         
Query: 444   ctgcaccttgatgccattgtcgattgtggtgggatgagaattgctgatcttatgacttct 503
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 25886 ctgcaccttgatgccattgtcgattgtggtgggatgagaattgctgatcttatgacttct 25945

                                                                         
Query: 504   tggcaaaactaaaaaatgtttcttcagatttagggaacttatcatgtataatggtcgcta 563
             |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 25946 tggcaaaactaaaaaatg-ttcttcagatttagggaacttatcatgtataatggtcgcta 26004

                                                                         
Query: 564   tgtcgtcaaagtagagtacttcaaggcatcgttctggac-caaaacgtacggtctgagac 622
             ||||||||||||||||||||||| |  |||||||||||| ||||||||||||||||||||
Sbjct: 26005 tgtcgtcaaagtagagtacttcaggcaatcgttctggacacaaaacgtacggtctgagac 26064

                                                                         
Query: 623   ctatgctgaacgagttcttcctgtttttctcgtcaccatggggcgtttgggacataaagt 682
             |||||||||||||||||| |||||||||||||||||||| |||||||||| |||| ||||
Sbjct: 26065 ctatgctgaacgagttctccctgtttttctcgtcaccat-gggcgtttggtacat-aagt 26122

                                                                         
Query: 683   gggtttgaaaattcgcagatacggattataagtcattccaattgggaatttggggatgga 742
             ||||||||||||  |||||||| ||||||||||||||||| ||| | ||||| |||||||
Sbjct: 26123 gggtttgaaaatctgcagatactgattataagtcattccagttgtg-atttgtggatgga 26181

                                        
Query: 743   ttttgttcttatgaaaaccatttaaat 769
             |||||||| |||| |||||| ||||||
Sbjct: 26182 ttttgttcatatggaaaccaattaaat 26208


  Database: Klactis 3X assemblage 11/02
    Posted date:  Nov 27, 2002 12:23 PM
  Number of letters in database: 10,358,551
  Number of sequences in database:  1807
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7749
Number of Sequences: 1807
Number of extensions: 7749
Number of successful extensions: 56
Number of sequences better than 1.0e-20: 1
length of query: 984
length of database: 10,358,551
effective HSP length: 16
effective length of query: 968
effective length of database: 10,329,639
effective search space: 9999090552
effective search space used: 9999090552
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)