BLASTN 2.2.3 [May-13-2002]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FJ0AC40ZA09RM1.SCF screened BAC_end
         (959 letters)

Database: Klactis 3X assemblage 11/02 
           1807 sequences; 10,358,551 total letters

Searching....done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

3x_Contig1730                                                        1370   0.0  

>3x_Contig1730 
          Length = 17223

 Score = 1370 bits (691), Expect = 0.0
 Identities = 811/848 (95%), Gaps = 3/848 (0%)
 Strand = Plus / Minus

                                                                        
Query: 45   cttaagataaggtttggtacaatggcaataacaaaacacacacctaatcggaaaagagag 104
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8873 cttaagataaggtttggtacaatggcaataacaaaacacacacctaatcggaaaagagag 8814

                                                                        
Query: 105  acttgtcttaatctgatcaatgcagaatcactaacaaaatagcaaatacacttaaaaaat 164
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8813 acttgtcttaatctgatcaatgcagaatcactaacaaaatagcaaatacacttaaaaaat 8754

                                                                        
Query: 165  acaaataagctaacgtagaacgaaagcttcttttcctgtaaattacaaatttatttctta 224
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8753 acaaataagctaacgtagaacgaaagcttcttttcctgtaaattacaaatttatttctta 8694

                                                                        
Query: 225  aaggtgtggaaatattgaaagttcaataaattttcaattttttttccttcctttacctat 284
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8693 aaggtgtggaaatattgaaagttcaataaattttcaattttttttccttcctttacctat 8634

                                                                        
Query: 285  attttttcaaaactttctctgtttttgatcggatcctccctcctatgtgttcttctttgt 344
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8633 attttttcaaaactttctctgtttttgatcggatcctccctcctatgtgttcttctttgt 8574

                                                                        
Query: 345  ctctgtttcgtttctgctcttgtgttcttgttccggccaaagaggtcncaaaaaaaaaaa 404
            |||||||||||||||||||||||||||||||||||||||||||||||  |||||||| ||
Sbjct: 8573 ctctgtttcgtttctgctcttgtgttcttgttccggccaaagaggtccaaaaaaaaa-aa 8515

                                                                        
Query: 405  aaaaaaacacgatctaagttcctcagtagtcgtaggaaacgatgacgtgttttcattggt 464
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8514 aaaaaaacacgatctaagttcctcagtagtcgtaggaaacgatgacgtgttttcattggt 8455

                                                                        
Query: 465  tgcgagtcacgtggaaattaaacactatgncttcacttttaatagatatatttgacctta 524
            |||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||
Sbjct: 8454 tgcgagtcacgtggaaattaaacactatgctttcacttttaatagatatatttgacctta 8395

                                                                        
Query: 525  atagacgctatgaggcttctt-aaagtaatttgtattggatatttggtgcatcgagagtt 583
            ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 8394 atagacgctatgaggcttcttaaaagtaatttgtattggatatttggtgcatcgagagtt 8335

                                                                        
Query: 584  tgagactaagattcgctatcttacattcacgtgatttaataatagcacgtgatctatata 643
            ||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 8334 tgagactaagaatcgctatcttacaatcacgtgatttaataatagcacgtgatctatata 8275

                                                                        
Query: 644  ttgtcctcttctttttgaagatcccgaaagggtatctggagtttcttttttgtagttgaa 703
            || |||||||||||||||||||||  |||||  |||||||||||||||||||||||||||
Sbjct: 8274 ttttcctcttctttttgaagatccgaaaaggtaatctggagtttcttttttgtagttgaa 8215

                                                                        
Query: 704  aaattcangaaaagtgatcgttgagagatgagacgagatgagatgagatgagagactctt 763
            ||||||| ||||  ||||  ||||||||||||||||||||||||||||||||||||||||
Sbjct: 8214 aaattcaagaaagttgatgtttgagagatgagacgagatgagatgagatgagagactctt 8155

                                                                        
Query: 764  atttggataaatcagctgtactcaatattgagttgtaagtgaagacgggggaattacacg 823
            || |||||||||||||||||||||||| |||||||||||||| ||| || ||| ||||||
Sbjct: 8154 atatggataaatcagctgtactcaatagtgagttgtaagtgaggac-ggtgaagtacacg 8096

                                                                        
Query: 824  taaattccacgcagataaatggggttaaaaggttttggccgaacaaaatggagactttgc 883
            |||| | ||||||||| ||  |||| |||||  ||||||||||||||  | |||| ||||
Sbjct: 8095 taaaatacacgcagattaaatgggtaaaaagtctttggccgaacaaatcgcagacattgc 8036

                    
Query: 884  gattaaac 891
            || |||||
Sbjct: 8035 gaataaac 8028


  Database: Klactis 3X assemblage 11/02
    Posted date:  Nov 27, 2002 12:23 PM
  Number of letters in database: 10,358,551
  Number of sequences in database:  1807
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 22,108
Number of Sequences: 1807
Number of extensions: 22108
Number of successful extensions: 3509
Number of sequences better than 1.0e-20: 1
length of query: 959
length of database: 10,358,551
effective HSP length: 16
effective length of query: 943
effective length of database: 10,329,639
effective search space: 9740849577
effective search space used: 9740849577
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)