BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC40ZA11FM1.SCF screened BAC_end
(959 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1803 961 0.0
>3x_Contig1803
Length = 52241
Score = 961 bits (485), Expect = 0.0
Identities = 563/581 (96%), Gaps = 6/581 (1%)
Strand = Plus / Minus
Query: 86 ctcgctaataagaaatttgaatattcgggggaactgctcatcgtagattcggtgttttca 145
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10930 ctcgctaataagaaatttgaatattcgggggaactgctcatcgtagattcggtgttttca 10871
Query: 146 ggatctggccgggataaagactgcgatttcgccacgaacgtcatagcacaattctttgag 205
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10870 ggatctggccgggataaagactgcgatttcgccacgaacgtcatagcacaattctttgag 10811
Query: 206 caggttattgtcccttaccgcctaataaaaactacatccaagtcatctgtcatagaactg 265
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10810 caggttattgtcccttaccgcctaataaaaactacatccaagtcatctgtcatagaactg 10751
Query: 266 gcctcgagcattgacagcactagacagtacactgttctctttctttctggtgatacatcg 325
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10750 gcctcgagcattgacagcactagacagtacactgttctctttctttctggtgatacatcg 10691
Query: 326 atatcagaattcgttaataacctgcccttgaaccacgactgtatttcagtgcttccattc 385
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10690 atatcagaattcgttaataacctgcccttgaaccacgactgtatttcagtgcttccattc 10631
Query: 386 ccaatgggtacaggatatgcatgggcaagctctttgaagttgatggatccagctgtcata 445
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10630 ccaatgggtacaggaaatgcatgggcaagctctttgaagttgatggatccagctgtcata 10571
Query: 446 ttctcacaatttgtcaatggtaagttgtcctgcaacgatttcccgttgtatagggcaact 505
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10570 ttctcacaatttgtcaatggtaagttgtcctgcaacgatttcccgttgtatagggcaact 10511
Query: 506 tttgac-acgggtatgtcctttaattcttcataattttgtcacttgggatttcatgcaaa 564
|||||| |||| ||||||||| ||||||||||||||||||||| ||||||||||||||||
Sbjct: 10510 tttgacaacggttatgtccttaaattcttcataattttgtcac-tgggatttcatgcaaa 10452
Query: 565 tttacttcatttctgcgaagaaaatgagttcccaaaaatggggcattgaaagggttataa 624
|||||||||| ||||||||||| |||||| || ||||| ||||||||||||| ||| |
Sbjct: 10451 tttacttcatctctgcgaagaagatgagtaccagaaaat-gggcattgaaaggtttagag 10393
Query: 625 ttgctagcccagcg-attttaagaaaaatacaagctcgaat 664
||||||| |||||| |||||||| | |||||||||||||||
Sbjct: 10392 ttgctag-ccagcgaattttaag-agaatacaagctcgaat 10354
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 14,612
Number of Sequences: 1807
Number of extensions: 14612
Number of successful extensions: 221
Number of sequences better than 1.0e-20: 1
length of query: 959
length of database: 10,358,551
effective HSP length: 16
effective length of query: 943
effective length of database: 10,329,639
effective search space: 9740849577
effective search space used: 9740849577
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)