BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC40ZA11RM1.SCF screened BAC_end
(933 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1657 1261 0.0
>3x_Contig1657
Length = 14558
Score = 1261 bits (636), Expect = 0.0
Identities = 751/779 (96%), Gaps = 8/779 (1%)
Strand = Plus / Plus
Query: 46 gcttagtgaacgggataaaaactttgggagatgctattaggttacttgatgtggatttta 105
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 5537 gcttagtgaacgggataaaaactgagggagatgctattaggttacttgatgtggatttta 5596
Query: 106 acatgagcgttgaggtaaatgaatgccagcctagttccacagttaccgttgatttataat 165
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5597 acatgagcgttgaggtaaatgaatgccagcctagttccacagttaccgttgatttataat 5656
Query: 166 catggattctgtgaaacatacatacattatttttgtttagtatataaggatt-catcact 224
|||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 5657 catggagtctgtgaaacatacatacattatttttgtttagtatataaggaacgcatcact 5716
Query: 225 tctggaccctctcttgttctgcaatataaaccttgcatatagactcgttataggcaaggc 284
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5717 tctggaccctctcttgttctgcaatataaaccttgcatatagactcgttataggcaaggc 5776
Query: 285 aagtaaacatatataggttgctcggaatcgtactcgtaaaaagactagttcgaaacaatg 344
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5777 aagtaaacatatataggttgctcggaatcgtactcgtaaaaagactagttcgaaacaatg 5836
Query: 345 gctacaggtatttccaagactttgaaatataacgcacaaacggataagttaatcactttt 404
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5837 gctacaggtatttccaagactttgaaatataacgcacaaacggataagttaatcactttt 5896
Query: 405 gcagctggctgcttctggggtactcaacacatctttttgaagcatttcggggacaagatc 464
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5897 gcagctggctgcttctggggtactcaacacatctttttgaagcatttcggggacaagatc 5956
Query: 465 attgatggcaaagttggatattctaatggatccgaaagtctgaaagacaaaccagataca 524
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5957 attgatggcaaagttggatattctaatggatccgaaagtctgaaagacaaaccagataca 6016
Query: 525 gtttcttacgaacgtgtcaagaatggtgataccggcttcgctgaagtttatcanatctca 584
||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||
Sbjct: 6017 gtttcttacgaacgtgtcaagaagggtgataccggcttcgctgaagtttatcaaatctca 6076
Query: 585 tacaatcctaagctggtatctttgaatgagcttgtagacttctttttccgtattcatgat 644
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 6077 tacaatcctaagctggtatctttgaaggagcttgtagacttctttttccgtattcatgat 6136
Query: 645 cctactacggtaaatgctcatggccctgatcaatgtagtcattacccgta-tgctatttt 703
|||||||||||||||||||| |||||||||||| ||||||| || ||||| |||||| ||
Sbjct: 6137 cctactacggtaaatgctcagggccctgatcaaggtagtcaata-ccgtagtgctatctt 6195
Query: 704 tgcgcactcagaagcttgattctc-acgagctaaaaaaa-tgaaagaagcaggggccgcc 761
||||||||||||||| ||| |||| |||||||||||||| |||||| ||||| ||| |||
Sbjct: 6196 tgcgcactcagaagc-tga-tctcaacgagctaaaaaaattgaaag-agcagtggcagcc 6252
Query: 762 aaaatggaacaacaagattggtcctgatttctttttgatggaaaacttctatgatgctg 820
|||||||||||||||||||| | ||||| ||| |||||| || ||||||||||||||||
Sbjct: 6253 aaaatggaacaacaagattgttactgatatctctttgattgataacttctatgatgctg 6311
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7230
Number of Sequences: 1807
Number of extensions: 7230
Number of successful extensions: 42
Number of sequences better than 1.0e-20: 1
length of query: 933
length of database: 10,358,551
effective HSP length: 16
effective length of query: 917
effective length of database: 10,329,639
effective search space: 9472278963
effective search space used: 9472278963
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)