BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC40ZA12FM1.SCF screened BAC_end
(1014 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1762 821 0.0
>3x_Contig1762
Length = 22098
Score = 821 bits (414), Expect = 0.0
Identities = 452/458 (98%), Gaps = 5/458 (1%)
Strand = Plus / Minus
Query: 87 ctgaatgttatttctattagataaatgacattccgaactgcccaagcaacgactttcaaa 146
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3728 ctgaatgttatttctattagataaatgacattccgaactgcccaagcaacgactttcaaa 3669
Query: 147 acaggaacgcaagttctttacttataccaaaagaagaagtaaaaaaccccccaaaaaaac 206
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3668 acaggaacgcaagttctttacttataccaaaagaagaagtaaaaaaccccccaaaaaaac 3609
Query: 207 cggaactgccaccgatcttaaggtttgactgatctgttatttcagctcatacccgtccag 266
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3608 cggaactgccaccgatcttaaggtttgactgatctgttatttcagctcatacccgtccag 3549
Query: 267 caattgtaatgaatacttgtgaagtttaattttatttttcctctttttatatatataatt 326
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3548 caattgtaatgaatacttgtgaagtttaattttatttttcctctttttatatatataatt 3489
Query: 327 ttgtaatacaatatgctattgtcactaataattaacttaattttaataccataaacttac 386
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3488 ttgtaatacaatatgctattgtcactaataattaacttaattttaataccataaacttac 3429
Query: 387 tgcttctaagaatgaaacattaacattctacgaggtgcaatgaagtgttcatccaattac 446
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3428 tgcttctaagaatgaaacattaacattctacgaggtgcaatgaagtgttcatccaattac 3369
Query: 447 tatccaaaagaaactgtcacctggtctgttatatttttcataaactcattgatattttct 506
|||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||
Sbjct: 3368 tatccaaaagaaactgtcacct-gtctgttatatttttcataaactcattgata-tttct 3311
Query: 507 gtccaggcctcatttattgaaaagcaatttaaacgtta 544
||||| | |||| |||||||||||||| ||||||||||
Sbjct: 3310 gtcca-gtctca-ttattgaaaagcaa-ttaaacgtta 3276
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 15,830
Number of Sequences: 1807
Number of extensions: 15830
Number of successful extensions: 122
Number of sequences better than 1.0e-20: 1
length of query: 1014
length of database: 10,358,551
effective HSP length: 16
effective length of query: 998
effective length of database: 10,329,639
effective search space: 10308979722
effective search space used: 10308979722
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)