BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC40ZA12RM1.SCF screened BAC_end
(932 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1717 1009 0.0
>3x_Contig1717
Length = 18389
Score = 1009 bits (509), Expect = 0.0
Identities = 672/708 (94%), Gaps = 14/708 (1%)
Strand = Plus / Plus
Query: 44 cttggtgatccattgcccttaccttatcttgaccctcagcaaaaaatggaagttggtcgt 103
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15708 cttggtgatccattgcccttaccttatcttgaccctcagcaaaaaatggaagttggtcgt 15767
Query: 104 gacctcgaatccagatggaatactataatatcgaacgcaaaggtacgacagactaaagca 163
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15768 gacctcgaatccagatggaatactataatatcgaacgcaaaggtacgacagactaaagca 15827
Query: 164 gagcctgtgaataaggccaagagggtattagaagcaccgtcttttgaaagtcaatttttt 223
|||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 15828 gagcctgtgaataaggccaagagggtattataagcaccgtcttttgaaagtcaaagaaaa 15887
Query: 224 ttttcccgcaaagtgtttcaatctagtgaaataactacattggaatcccaattgaaggac 283
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15888 atttcccgcaaagtgtttcaatctagtgaaataactacattggaatcccaattgaaggac 15947
Query: 284 actagtgccaagctagatcggttgatcgatattttgcaggacaaagaaactttaattggc 343
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15948 actagtgccaagctagatcggttgatcgatattttgcaggacaaagaaactttaattggc 16007
Query: 344 aaatcaatgacctatgaaccagtgatatggttaagttgtatcattattctcgtactttgc 403
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16008 aaatcaatgacctatgaaccagtgatatggttaagttgtatcattattctcgtactttgc 16067
Query: 404 aatgtatgggtgtatcattacctatgataaagactgaattgatatataaatgcacgtatt 463
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16068 aatgtatgggtgtatcattacctatgataaagactgaattgatatataaatgcacgtatt 16127
Query: 464 tacatgtaaagttcatagatatcatgacctgnagtctatctaatgtacaaagaacggacg 523
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 16128 tacatgtaaagttcatagatatcatgacctggagtctatctaatgtacaaagaacggacg 16187
Query: 524 cttaatgcttagagtttc-aaaatat-aactgatca-tcatcgaagtcat-cttgggtgg 579
|||||||||||||||||| ||||||| ||||||||| ||||||||||||| |||||||||
Sbjct: 16188 cttaatgcttagagtttcaaaaatataaactgatcattcatcgaagtcatccttgggtgg 16247
Query: 580 -ttcttattctcgtttct-atgtat-aatc-atggccggaga-aatgcagc-atatccgc 633
||||||||||||||||| |||||| |||| ||||||| ||| || ||||| | | ||||
Sbjct: 16248 tttcttattctcgtttctcatgtataaatcaatggccgtagagaaggcagcaaaacccgc 16307
Query: 634 acaccccact-atgctgcccgaagtccactcttgt-tgccaagcca-cggctgttaaa-a 689
||| |||||| |||||||| || |||||||||||| |||||||||| || |||| ||| |
Sbjct: 16308 acaacccactaatgctgcctgaggtccactcttgtatgccaagccaccgcctgtcaaaca 16367
Query: 690 acctgcagcttcaccgttatttttatcgttctttgccctaaacgattc 737
|||||||||| ||||||||| | |||||||||||||||| ||||||||
Sbjct: 16368 acctgcagctacaccgttatatatatcgttctttgcccttaacgattc 16415
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7533
Number of Sequences: 1807
Number of extensions: 7533
Number of successful extensions: 49
Number of sequences better than 1.0e-20: 1
length of query: 932
length of database: 10,358,551
effective HSP length: 16
effective length of query: 916
effective length of database: 10,329,639
effective search space: 9461949324
effective search space used: 9461949324
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)