BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC40ZB01FM1.SCF screened BAC_end
(941 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1699 944 0.0
>3x_Contig1699
Length = 18038
Score = 944 bits (476), Expect = 0.0
Identities = 569/594 (95%), Gaps = 6/594 (1%)
Strand = Plus / Minus
Query: 87 tgggatacggcaggacaggaagaattcgacaggttgcgatcgttatcatacagtgacaca 146
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2852 tgggatacggcaggacaggaagaattcgacaggttgcgatcgttatcatacagtgacaca 2793
Query: 147 catactattatgttgtgtttttcggtagattcaagggactcgctagagaacgttcaaaat 206
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2792 catactattatgttgtgtttttcggtagattcaagggactcgctagagaacgttcaaaat 2733
Query: 207 aaatgggttggcgaaatcgcagatcattgtgaaggtgtgaaattagtacttgtagcgtta 266
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2732 aaatgggttggcgaaatcgcagatcattgtgaaggtgtgaaattagtacttgtagcgtta 2673
Query: 267 aaatgtgatttaagaaatttggaagagttcgggaacgaatctgctgccattaccccaggc 326
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2672 aaatgtgatttaagaaatttggaagagttcgggaacgaatctgctgccattaccccaggc 2613
Query: 327 tctattcagaacaggaatagtaacgctaaggataatggattgattagttacgaagaaggt 386
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2612 tctattcagaacaggaatagtaacgctaaggataatggattgattagttacgaagaaggt 2553
Query: 387 ttggatatggcgaagaaaatcggtgcattgcgctacttggaatgcagcgccaaaatgaat 446
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2552 ttggatatggcgaagaaaatcggtgcattgcgctacttggaatgcagcgccaaaatgaat 2493
Query: 447 agaggtgtcaacgaggcattcaccgaagctgctcgttgtgcattgactgcaactncaaaa 506
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 2492 agaggtgtcaacgaggcattcaccgaagctgctcgttgtgcattgactgcaactccaaag 2433
Query: 507 ggggcgaatgataccattcctcaggatataagaagcagttgtattatttatgggatctta 566
||||||||||||||||| |||||||||| | ||||||||||||||| ||||| |||||||
Sbjct: 2432 ggggcgaatgataccatccctcaggataaaggaagcagttgtatta-ttatgtgatctta 2374
Query: 567 taaaataacaaaactacacttactttcgttaagaacggaatttaatacccgggttattaa 626
||||||||| ||||||||||||||| ||||||| ||||||| |||| || || || |||
Sbjct: 2373 taaaataac-aaactacacttacttacgttaag-acggaatagaata-ccaggataataa 2317
Query: 627 tggcgttaccgggtttactttgggagaaaattgaggggaaagacttacttgaat 680
|| || || ||||||||| ||||||||| |||||||||||||| || |||||
Sbjct: 2316 tgcagtaac--ggtttacttcgggagaaaaatgaggggaaagactaacatgaat 2265
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 8313
Number of Sequences: 1807
Number of extensions: 8313
Number of successful extensions: 88
Number of sequences better than 1.0e-20: 1
length of query: 941
length of database: 10,358,551
effective HSP length: 16
effective length of query: 925
effective length of database: 10,329,639
effective search space: 9554916075
effective search space used: 9554916075
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)