BLASTN 2.2.3 [May-13-2002]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FJ0AC40ZB01RM1.SCF screened BAC_end
         (956 letters)

Database: Klactis 3X assemblage 11/02 
           1807 sequences; 10,358,551 total letters

Searching....done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

3x_Contig1642                                                        1057   0.0  

>3x_Contig1642 
          Length = 16641

 Score = 1057 bits (533), Expect = 0.0
 Identities = 567/576 (98%), Gaps = 2/576 (0%)
 Strand = Plus / Plus

                                                                        
Query: 49   tgtttttttatagatgttttaatagtcaataatgcaacgatcaatgaacttaggattcag 108
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2604 tgtttttttatagatgttttaatagtcaataatgcaacgatcaatgaacttaggattcag 2663

                                                                        
Query: 109  tacttttctttgttaagtaaagcagatacaagtagcagctaaaatttatcattatcaaag 168
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2664 tacttttctttgttaagtaaagcagatacaagtagcagctaaaatttatcattatcaaag 2723

                                                                        
Query: 169  tatttattcaacctatatacttttcattaacaacttgcccctttacattttattcgaaag 228
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2724 tatttattcaacctatatacttttcattaacaacttgcccctttacattttattcgaaag 2783

                                                                        
Query: 229  agtgattccatgtcttatatggcaataggatggatgaatcgatcgacaatttccctccag 288
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2784 agtgattccatgtcttatatggcaataggatggatgaatcgatcgacaatttccctccag 2843

                                                                        
Query: 289  cgaagtgcattgctgaaagtaccgtaagaccatgtcaaatttggagccccttggttgtat 348
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2844 cgaagtgcattgctgaaagtaccgtaagaccatgtcaaatttggagccccttggttgtat 2903

                                                                        
Query: 349  ccatgatatttgttgaactgttcgctcatcgatccgtcgttacttacatgctcgttaact 408
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2904 ccatgatatttgttgaactgttcgctcatcgatccgtcgttacttacatgctcgttaact 2963

                                                                        
Query: 409  ttgcttaggaatgaatcaccgtatttgaatattgtgtacaacgtttggttgaacgctaat 468
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2964 ttgcttaggaatgaatcaccgtatttgaatattgtgtacaacgtttggttgaacgctaat 3023

                                                                        
Query: 469  gtattatatggtatcaagatcagcgaatncttcatattcccaaattcgaagaatttagtc 528
            |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 3024 gtattatatggtatcaagatcagcgaatccttcatattcccaaattcgaagaatttagtc 3083

                                                                        
Query: 529  cagaacttgttcgatttcggatcaatgaggtaaaggtttctcatcgggatacattttatg 588
            ||||||||||||||| |||||||||||| ||||||||||||||||| |||||||||||| 
Sbjct: 3084 cagaacttgttcgatatcggatcaatga-gtaaaggtttctcatcgtgatacattttatt 3142

                                                
Query: 589  gactaatttggaaattaattcgggagaaggttaacg 624
            |||||||||| |||| ||||||| || |||||||||
Sbjct: 3143 gactaatttgtaaatcaattcggcag-aggttaacg 3177


  Database: Klactis 3X assemblage 11/02
    Posted date:  Nov 27, 2002 12:23 PM
  Number of letters in database: 10,358,551
  Number of sequences in database:  1807
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7004
Number of Sequences: 1807
Number of extensions: 7004
Number of successful extensions: 28
Number of sequences better than 1.0e-20: 1
length of query: 956
length of database: 10,358,551
effective HSP length: 16
effective length of query: 940
effective length of database: 10,329,639
effective search space: 9709860660
effective search space used: 9709860660
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)