BLASTN 2.2.3 [May-13-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= FJ0AC40ZB01RM1.SCF screened BAC_end (956 letters) Database: Klactis 3X assemblage 11/02 1807 sequences; 10,358,551 total letters Searching....done Score E Sequences producing significant alignments: (bits) Value 3x_Contig1642 1057 0.0 >3x_Contig1642 Length = 16641 Score = 1057 bits (533), Expect = 0.0 Identities = 567/576 (98%), Gaps = 2/576 (0%) Strand = Plus / Plus Query: 49 tgtttttttatagatgttttaatagtcaataatgcaacgatcaatgaacttaggattcag 108 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2604 tgtttttttatagatgttttaatagtcaataatgcaacgatcaatgaacttaggattcag 2663 Query: 109 tacttttctttgttaagtaaagcagatacaagtagcagctaaaatttatcattatcaaag 168 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2664 tacttttctttgttaagtaaagcagatacaagtagcagctaaaatttatcattatcaaag 2723 Query: 169 tatttattcaacctatatacttttcattaacaacttgcccctttacattttattcgaaag 228 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2724 tatttattcaacctatatacttttcattaacaacttgcccctttacattttattcgaaag 2783 Query: 229 agtgattccatgtcttatatggcaataggatggatgaatcgatcgacaatttccctccag 288 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2784 agtgattccatgtcttatatggcaataggatggatgaatcgatcgacaatttccctccag 2843 Query: 289 cgaagtgcattgctgaaagtaccgtaagaccatgtcaaatttggagccccttggttgtat 348 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2844 cgaagtgcattgctgaaagtaccgtaagaccatgtcaaatttggagccccttggttgtat 2903 Query: 349 ccatgatatttgttgaactgttcgctcatcgatccgtcgttacttacatgctcgttaact 408 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2904 ccatgatatttgttgaactgttcgctcatcgatccgtcgttacttacatgctcgttaact 2963 Query: 409 ttgcttaggaatgaatcaccgtatttgaatattgtgtacaacgtttggttgaacgctaat 468 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2964 ttgcttaggaatgaatcaccgtatttgaatattgtgtacaacgtttggttgaacgctaat 3023 Query: 469 gtattatatggtatcaagatcagcgaatncttcatattcccaaattcgaagaatttagtc 528 |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| Sbjct: 3024 gtattatatggtatcaagatcagcgaatccttcatattcccaaattcgaagaatttagtc 3083 Query: 529 cagaacttgttcgatttcggatcaatgaggtaaaggtttctcatcgggatacattttatg 588 ||||||||||||||| |||||||||||| ||||||||||||||||| |||||||||||| Sbjct: 3084 cagaacttgttcgatatcggatcaatga-gtaaaggtttctcatcgtgatacattttatt 3142 Query: 589 gactaatttggaaattaattcgggagaaggttaacg 624 |||||||||| |||| ||||||| || ||||||||| Sbjct: 3143 gactaatttgtaaatcaattcggcag-aggttaacg 3177 Database: Klactis 3X assemblage 11/02 Posted date: Nov 27, 2002 12:23 PM Number of letters in database: 10,358,551 Number of sequences in database: 1807 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 7004 Number of Sequences: 1807 Number of extensions: 7004 Number of successful extensions: 28 Number of sequences better than 1.0e-20: 1 length of query: 956 length of database: 10,358,551 effective HSP length: 16 effective length of query: 940 effective length of database: 10,329,639 effective search space: 9709860660 effective search space used: 9709860660 T: 0 A: 40 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 51 (101.6 bits)