BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC40ZB02FM1.SCF screened BAC_end
(917 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1635 1213 0.0
3x_Contig40 137 4e-32
>3x_Contig1635
Length = 12349
Score = 1213 bits (612), Expect = 0.0
Identities = 675/691 (97%), Gaps = 4/691 (0%)
Strand = Plus / Minus
Query: 87 tccgacagccaaccatcttctatcggtaggttcactcaaagcattgtccaaatcatcaaa 146
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1756 tccgacagccaaccatcttctatcggtaggttcactcaaagcattgtccaaatcatcaaa 1697
Query: 147 ttcatcagacccttggaatccaatgaatgaagggtcgatttgtctgatggccttttggaa 206
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1696 ttcatcagacccttggaatccaatgaatgaagggtcgatttgtctgatggccttttggaa 1637
Query: 207 agcttcttcaaaatttctaccgattgccataacttcaccgacagatttcatagatgaacc 266
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1636 agcttcttcaaaatttctaccgattgccataacttcaccgacagatttcatagatgaacc 1577
Query: 267 gacggatctgttcacgtgctggaacttcgataaatcccaacgtgggatcttagcgacaat 326
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1576 gacggatctgttcacgtgctggaacttcgataaatcccaacgtgggatcttagcgacaat 1517
Query: 327 gtaatccaaagatggttcgaaatttgcaactgttgtcttggtgattgggttaggaagttc 386
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1516 gtaatccaaagatggttcgaaatttgcaactgttgtcttggtgattgggttaggaagttc 1457
Query: 387 aggtaaagtgtatcctaatgcaatcttggcggcagtataagccaatggataaccggtagc 446
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1456 aggtaaagtgtatcctaatgcaatcttggcggcagtataagccaatggataaccggtagc 1397
Query: 447 ttttgaggccaaagcggatgaacgagacaaacgtgcattcacttcaatgactctataatc 506
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1396 ttttgaggccaaagcggatgaacgagacaaacgtgcattcacttcaatgactctataatc 1337
Query: 507 taaactgtctggacttaaagcatattgtacgttacattcaccgatgacacccaagtgtct 566
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1336 taaactgtctggacttaaagcatattgtacgttacattcaccgatgacacccaagtgtct 1277
Query: 567 aataatcttgattgctgcgcttctcaacatatggaactcctcatcggatagagtttgaga 626
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1276 aataatcttgattgctgcgcttctcaacatatggaactcctcatcggatagagtttgaga 1217
Query: 627 aggtgc-aaaacgatagaatcacctgtatggatacctagtggatcaaaa-tttccatgtt 684
|||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 1216 aggtgcaaaaacgatagaatcacctgtatggatacctagtggatcaaaattttccatgtt 1157
Query: 685 acacacagtattacaattttccgacacgatctnttaccacctcgtttttcaatttctttc 744
|||||||||| ||||| ||||||||||||||| | ||||| ||| | ||| | |||||||
Sbjct: 1156 acacacagtaatacaa-tttccgacacgatctctaaccacttcg-tattccacttctttc 1099
Query: 745 caagccttcaaagatttttcgaacagaattt 775
|| ||||||||||||| |||| |||||||
Sbjct: 1098 cagcccttcaaagatttctcgacaagaattt 1068
>3x_Contig40
Length = 946
Score = 137 bits (69), Expect = 4e-32
Identities = 198/241 (82%)
Strand = Plus / Plus
Query: 159 ttggaatccaatgaatgaagggtcgatttgtctgatggccttttggaaagcttcttcaaa 218
||||||| |||||||||||||| ||||||| |||||| |||||||||| || || |||
Sbjct: 541 ttggaataaaatgaatgaagggtagatttgtatgatggaattttggaaagattattaaaa 600
Query: 219 atttctaccgattgccataacttcaccgacagatttcatagatgaaccgacggatctgtt 278
|||| || ||||| |||| || | || |||||| ||||||||| || |||| ||||
Sbjct: 601 atttataaagattgaaataaattaaaagaaagatttaatagatgaaaagaaggatatgtt 660
Query: 279 cacgtgctggaacttcgataaatcccaacgtgggatcttagcgacaatgtaatccaaaga 338
| ||| ||||| || ||||||| || ||||||| |||| || |||||||| |||||
Sbjct: 661 aaagtgatggaaattagataaataaaaaagtgggatattagagaaaatgtaataaaaaga 720
Query: 339 tggttcgaaatttgcaactgttgtcttggtgattgggttaggaagttcaggtaaagtgta 398
||||| |||||||| || |||||| |||||||||||||||||||||| ||||||||||||
Sbjct: 721 tggttagaaatttgaaaatgttgtattggtgattgggttaggaagttaaggtaaagtgta 780
Query: 399 t 399
|
Sbjct: 781 t 781
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6615
Number of Sequences: 1807
Number of extensions: 6615
Number of successful extensions: 50
Number of sequences better than 1.0e-20: 2
length of query: 917
length of database: 10,358,551
effective HSP length: 16
effective length of query: 901
effective length of database: 10,329,639
effective search space: 9307004739
effective search space used: 9307004739
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)