BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC40ZB02RM1.SCF screened BAC_end
(913 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1002 1455 0.0
>3x_Contig1002
Length = 4066
Score = 1455 bits (734), Expect = 0.0
Identities = 821/845 (97%), Gaps = 4/845 (0%)
Strand = Plus / Minus
Query: 51 atttttctgtcataagtaattcatcagaggcgattgggatgttcgaatcttcagaagctt 110
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4007 atttttctgtcagaagtaattcatcagaggcgattgggatgttcgaatcttcagaagctt 3948
Query: 111 gtagctctatccattgttcattactgatcacagttttcgcccaggatacgatcaaatttg 170
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3947 gtagctctatccattgttcattactgatcacagttttcgcccaggatacgatcaaatttg 3888
Query: 171 gaatggataccaatctaatcacactttcattatagtcacataatgtgaaattaatcccgg 230
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3887 gaatggataccaatctaatcacactttcattatagtcacataatgtgaaattaatcccgg 3828
Query: 231 tattgatgttggatcttagatattccataaaaagaaattccgatggaagcgacgtcccac 290
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3827 tattgatgttggatcttagatattccataaaaagaaattccgatggaagcgacgtcccac 3768
Query: 291 atcctagctctattatattttgacactgggaaatttgtgctggatttttaacaaatgagt 350
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3767 atcctagctctattatattttgacactgggaaatttgtgctggatttttaacaaatgagt 3708
Query: 351 ctactagatctattgaacattcccatgatttcaaaccaccttcgtacacatttctcctca 410
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3707 ctactagatctattgaacattcccatgatttcaaaccaccttcgtacacatttctcctca 3648
Query: 411 aatcttcattggtttcacccatcaaaatctccaattcaacattatttgtgcctgaatcca 470
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3647 aatcttcattggtttcacccatcaaaatctccaattcaacattatttgtgcctgaatcca 3588
Query: 471 cttctgacatcaattgatgtttaacgtcaaatagttcacgtctgtaaagaacagagtttg 530
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3587 cttctgacatcaattgatgtttaacgtcaaatagttcacgtctgtaaagaacagagtttg 3528
Query: 531 ttgttggagtttgcacttcttcaaaagatagacggacattcgcgagtgaacgtagtagat 590
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3527 ttgttggagtttgcacttcttcaaaagatagacggacattcgcgagtgaacgtagtagat 3468
Query: 591 catccagatcaatatatttgggttgattcactgattctcctagtaacactttcgaatcca 650
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 3467 catccagatcaatatatttgggttgattcactgattctcctagtaacacttcggaatcca 3408
Query: 651 atggattgattcgagggacagaagtagatggcttatcatttgtattttgattggcaatat 710
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 3407 atggattgattcgagggacagaagtagatggcttatcatctgtattttgattggcaatat 3348
Query: 711 ctagttcatcatcactgaaaatctt-gntagagaagccaaatgcaaaggacattattatt 769
||||||||||||||||| ||||||| | |||||||||||||||||||||||||||||||
Sbjct: 3347 ctagttcatcatcactg-aaatcttcgttagagaagccaaatgcaaaggacattattatc 3289
Query: 770 cggggtatgatgacaatgtgtctttctctggaagtaatttcctctattggccaatttttt 829
||| ||||| ||| ||||||||| ||||| ||||||||||||||||||||||| | | |
Sbjct: 3288 ggggttatgaggac-atgtgtcttcctctgtaagtaatttcctctattggccaaatatat 3230
Query: 830 gcgttggaaatgagatgcccttttcggattggatttttcattttcaattttttcttttcg 889
||||| || ||||||||| |||| | |||| ||||||||||||||||||||||||||||
Sbjct: 3229 gcgtt-gagatgagatgcgctttctgtattgaatttttcattttcaattttttcttttcg 3171
Query: 890 tttcc 894
|||||
Sbjct: 3170 tttcc 3166
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 8387
Number of Sequences: 1807
Number of extensions: 8387
Number of successful extensions: 70
Number of sequences better than 1.0e-20: 1
length of query: 913
length of database: 10,358,551
effective HSP length: 16
effective length of query: 897
effective length of database: 10,329,639
effective search space: 9265686183
effective search space used: 9265686183
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)