BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC40ZB03FM1.SCF screened BAC_end
(968 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1800 1219 0.0
>3x_Contig1800
Length = 38778
Score = 1219 bits (615), Expect = 0.0
Identities = 678/695 (97%), Gaps = 3/695 (0%)
Strand = Plus / Plus
Query: 87 tatgcaacttaccatctgcagtactaacatcttcgaattcaataccgtgatttgcccatt 146
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6606 tatgcaacttaccatctgcagtactaacatcttcgaattcaataccgtgatttgcccatt 6665
Query: 147 cccagataaagccaccttggtaaaacttctccttgtagaacaactcttgatattctttca 206
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6666 cccagataaagccaccttggtaaaacttctccttgtagaacaactcttgatattctttca 6725
Query: 207 aagagccaggaccgttacccattgcatggccgtactcacacaagatcaaaggcttttcaa 266
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6726 aagagccaggaccgttacccattgcatggccgtactcacacaagatcaaaggcttttcaa 6785
Query: 267 acttaccattttcatcagtgtggttcttcctccacctttccataatttcaaatgttgggt 326
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6786 acttaccattttcatcagtgtggttcttcctccacctttccataatttcaaatgttgggt 6845
Query: 327 acatgaaactaaagatatctgcactcaaagcgttcaagtcaccctcataatgcacaagtc 386
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6846 acatgaaactaaagatatctgcactcaaagcgttcaagtcaccctcataatgcacaagtc 6905
Query: 387 tggtaggatccaattgtttaattaacttgtacatggctttgtggtttctgccataacaag 446
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6906 tggtaggatccaattgtttaattaacttgtacatggctttgtggtttctgccataacaag 6965
Query: 447 cttcgttacccaaggaccagataataatcgaaggatgattgacatctcttatgacaagtt 506
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 6966 cttcgttacccaaggaccagataataatcgaaggatgattgacatctcttaggacaagtt 7025
Query: 507 gggaagctctgtctaagtacgcgacctcgtactctggattatctgataagtaatgggcat 566
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7026 gggaagctctgtctaagtacgcgacctcgtactctggattatctgataagtaatgggcat 7085
Query: 567 taacatcgtagagtttatttttagtatctggatattcagcctccaagttcgtatgacgat 626
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7086 taacatcgtagagtttatttttagtatctggatattcagcctccaagttcgtatgacgat 7145
Query: 627 taaatggctcttg-acaccatgattttc-agatctgcctcgtcaatgaccccttagccca 684
||||||||||||| ||||||||| |||| |||||||||||||||||||||| ||||||
Sbjct: 7146 taaatggctcttgaacaccatgagtttcaagatctgcctcgtcaatgacccagaagccca 7205
Query: 685 gcttatcgaagaggtcatacacctttagatggtttggataatgcgagttacgaacagcct 744
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
Sbjct: 7206 gcttatcgaagaggtcatacaccttaggatggtttggataatgcgagttacgaacagcat 7265
Query: 745 tggaggtaaactttttc-tttggatcaagtcccta 778
|| | ||||||| ||| || | ||||||||||||
Sbjct: 7266 tgatgttaaacttcttcattagaatcaagtcccta 7300
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6285
Number of Sequences: 1807
Number of extensions: 6285
Number of successful extensions: 44
Number of sequences better than 1.0e-20: 1
length of query: 968
length of database: 10,358,551
effective HSP length: 16
effective length of query: 952
effective length of database: 10,329,639
effective search space: 9833816328
effective search space used: 9833816328
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)