BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC40ZB03RM1.SCF screened BAC_end
(948 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1151 1404 0.0
>3x_Contig1151
Length = 5859
Score = 1404 bits (708), Expect = 0.0
Identities = 813/838 (97%), Gaps = 8/838 (0%)
Strand = Plus / Plus
Query: 51 ctttaagtttgattctagtgcttataatggtgtctatcaatgtgtcaaagtagacaaaaa 110
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2574 ctttaagtttgattctagtgcttataatggtgtctatcaatgtgtcaaagtagacaaaaa 2633
Query: 111 gggtgataggttttatgatctatatatggatacttcattggaaacggtgcttgcatttaa 170
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2634 gggtgataggttttatgatctatatatggatacttcattggaaacggtgcttgcatttaa 2693
Query: 171 aaggctgctttcaggttgtagagaattggatattggaacggttaaagttgcggtatgctg 230
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2694 aaggctgctttcaggttgtagagaattggatattggaacggttaaagttgcggtatgctg 2753
Query: 231 agagaaaggagaaggacgcttctttgcgcctatgtgattgcctattatggtaattactat 290
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2754 agagaaaggagaaggacgcttctttgcgcctatgtgattgcctattatggtaattactat 2813
Query: 291 ggaagttacatcaaacaactgaataacacaatttcattgatgaggcttcaatatcacatt 350
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2814 ggaagttacatcaaacaactgaataacacaatttcattgatgaggcttcaatatcacatt 2873
Query: 351 gggctatttgacgcaattgaggttttggcccattggtataaatgaagatcgttagatatt 410
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2874 gggctatttgacgcaattgaggttttggcccattggtataaatgaagatcgttagatatt 2933
Query: 411 ggatttttagttactcgatgccttctattcatgcgttcagtgatattaaaaagagttaga 470
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2934 ggatttttagttactcgatgccttctattcatgcgttcagtgatattaaaaagagttaga 2993
Query: 471 aactaaaagtttaataacgacaaaaggccacttatgttagacatctatcagaattttatg 530
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 2994 aactaaaagtttaataacgacaaaaggccacttatgttagacatctatcagaattttagg 3053
Query: 531 ttcaagaatgattgtttcgttttgattgtcactgcagtttcaacggtcgcttatggttta 590
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 3054 ttcaagaatgattgtttcgttttgattgtcactgcagtttcaacggtcgctaatggttta 3113
Query: 591 gttccagttgtgatatcgattttaactgggagagtatttaacctgttacaatctctcgga 650
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3114 gttccagttgtgatatcgattttaactgggagagtatttaacctgttacaatctctcgga 3173
Query: 651 actgatactttacaaacgaaatctgaatttgttcacgaacttatcgttaggtcattctca 710
|||||||||| |||||||||||||||||||||||||||||| || ||||||||||||
Sbjct: 3174 actgatacttacaaaacgaaatctgaatttgttcacgaacttacggtaaggtcattctca 3233
Query: 711 attgcagctgtggcagcttgtgtgatttccatattatgggtctcc-tatcgacctggatg 769
||||||||||||||||||||||||||| | |||| |||||||||| ||||||||||||||
Sbjct: 3234 attgcagctgtggcagcttgtgtgattccaatatcatgggtctccttatcgacctggatg 3293
Query: 770 acttttagag-acgacagggtttcagaatta-aaactctctcatcatg-tttacctcgag 826
||||| ||| |||||||||||||||||||| |||||||||||||||| ||||| |||||
Sbjct: 3294 actttaggagaacgacagggtttcagaattagaaactctctcatcatgttttacttcgag 3353
Query: 827 aaagatct-aaatggtacga-tcgnatg-aaacctgnaa-gagatttcattcagatta 880
|||||||| ||||||||||| ||| ||| ||||||| || |||||||||| |||||||
Sbjct: 3354 aaagatctaaaatggtacgattcgaatgaaaacctggaaggagatttcatccagatta 3411
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6694
Number of Sequences: 1807
Number of extensions: 6694
Number of successful extensions: 40
Number of sequences better than 1.0e-20: 1
length of query: 948
length of database: 10,358,551
effective HSP length: 16
effective length of query: 932
effective length of database: 10,329,639
effective search space: 9627223548
effective search space used: 9627223548
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)