BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC40ZB04FM1.SCF screened BAC_end
(926 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1794 898 0.0
>3x_Contig1794
Length = 36744
Score = 898 bits (453), Expect = 0.0
Identities = 491/501 (98%), Gaps = 2/501 (0%)
Strand = Plus / Minus
Query: 87 aagaagaataaagtgaatacttcctcaatgacgttcgattcagaggcaaaggaatctcag 146
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 19611 aagaagaataaagtgaatacttcctcaatgacgttcgattcagaggcaaaggaatctcag 19552
Query: 147 acacaacatggttcaatgacaaggatactcatgcaaaggttagaagagttaaatgagtta 206
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 19551 acacaacatggttcaatgacaaggatactcatgcaaaggttagaagagttaaatgagtta 19492
Query: 207 tccgataagaaatcaagcgggtcggtcaaagaacgagtgtatggttatttcttcagtgac 266
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 19491 tccgataagaaatcaagcgggtcggtcaaagaacgagtgtatggttatttcttcagtgac 19432
Query: 267 aattttatcaaatgtgtaaaatggacgctctggagacaggtggtgatgttaatcttcaac 326
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 19431 aattttatcaaatgtgtaaaatggacgctctggagacaggtggtgatgttaatcttcaac 19372
Query: 327 ggtcaacattccaaatgtctaaagccattacataaatcgatcatcatcatgttgtcattc 386
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 19371 ggtcaacattccaaatgtctaaagccattacataaatcgatcatcatcatgttgtcattc 19312
Query: 387 actttgctgagcgacccacaacatttagatattaactgggagctactcaaatacttgggg 446
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 19311 actttgctgagcgacccacaacatttagatattaactgggagctactcaaatacttgggg 19252
Query: 447 agatcaacgttatctcaagaacttggtaggataccacatttttaaaaaccaatcattttc 506
|||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||
Sbjct: 19251 agatcaacgttatctcaagaacttggtaggataccacattatcaaaaaccaatcattttc 19192
Query: 507 gctgccccttatctctcatatctaaccaggaacccaattgcctaattaaacaaac-gatt 565
||||||| | |||||||||||||||||||||||||||||||||| |||||| || ||||
Sbjct: 19191 gctgcccttagtctctcatatctaaccaggaacccaattgcctaa-taaacagactgatt 19133
Query: 566 tggtcctaggttgatttgtat 586
|| |||||| |||||||||||
Sbjct: 19132 tgttcctagtttgatttgtat 19112
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 17,948
Number of Sequences: 1807
Number of extensions: 17948
Number of successful extensions: 2214
Number of sequences better than 1.0e-20: 1
length of query: 926
length of database: 10,358,551
effective HSP length: 16
effective length of query: 910
effective length of database: 10,329,639
effective search space: 9399971490
effective search space used: 9399971490
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)