BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC40ZB04RM1.SCF screened BAC_end
(898 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1765 955 0.0
>3x_Contig1765
Length = 24733
Score = 955 bits (482), Expect = 0.0
Identities = 578/602 (96%), Gaps = 6/602 (0%)
Strand = Plus / Minus
Query: 45 cttgctgaattctgttaatgtaagcctttgaaatggcattccaacttctcatatatttag 104
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 17598 cttgctgaattctgttaatgtaagcctttgaaatggcattccaacttctcatatatttag 17539
Query: 105 ccaaacattggtcgacgcagttatcttgagaagcagcatatggagcattcagacatttct 164
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 17538 ccaaacattggtcgacgcagttatcttgagaagcagcatatggagcattcagacatttct 17479
Query: 165 caaaacagttctcagtgactttgttaactaactcggtagcattggcgatggctaattctt 224
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 17478 caaaacagttctcagtgactttgttaactaactcggtagcattggcgatggctaattctt 17419
Query: 225 gagagatttgagatttaagttgggtcttgacatcgctaggactggatgtggctggggtac 284
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 17418 gagagatttgagatttaagttgggtcttgacatcgctaggactggatgtggctggggtac 17359
Query: 285 cagatgatgaagagctaccaccaaagatcgaagttaaagccatatcttaatgtgttctat 344
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 17358 cagatgatgaagagctaccaccaaagatcgaagttaaagccatatcttaatgtgttctat 17299
Query: 345 gatagattattgatccgatgcaatgttcagaggggcctggatgatagattatagctgtta 404
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 17298 gatagattattgatccgatgcaatgttcagaggggcctggatgatagattatagctgtta 17239
Query: 405 attgtagattgccaatggatatttcagtttatgctaaagcttcaaatcattagttttttt 464
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 17238 attgtagattgccaatggatatttcagtttatgctaaagcttcaaatcattagt-ttttt 17180
Query: 465 ttttcaatatgaggaaagaacattcctttacatcgagcagcaatggaagggatagataac 524
|||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||
Sbjct: 17179 ttttcaatatgaggaagaaacattccttcacatcgagcagcaatggaagggatagataac 17120
Query: 525 tattggttcagcccggttaacaacctttcttttcttgc-atttaccg-ggtatttggaga 582
||||| ||||||||| || ||||||| || |||| ||| |||||||| | |||| | |||
Sbjct: 17119 tattgtttcagcccgtttcacaacctctcctttcctgcgatttaccgcgttattggaaga 17060
Query: 583 attgtttggaagttcccc-gagggatttacctactaa-aagaacccctgtcc-agtactt 639
|||||||||||||||| ||| ||||||| |||||| | ||||| |||||| |||||||
Sbjct: 17059 tatgtttggaagttccccagagtgatttacttactaatatgaaccactgtccaagtactt 17000
Query: 640 gt 641
||
Sbjct: 16999 gt 16998
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 13,515
Number of Sequences: 1807
Number of extensions: 13515
Number of successful extensions: 88
Number of sequences better than 1.0e-20: 1
length of query: 898
length of database: 10,358,551
effective HSP length: 16
effective length of query: 882
effective length of database: 10,329,639
effective search space: 9110741598
effective search space used: 9110741598
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)