BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC40ZB05FM1.SCF screened BAC_end
(941 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1794 1144 0.0
>3x_Contig1794
Length = 36744
Score = 1144 bits (577), Expect = 0.0
Identities = 631/645 (97%), Gaps = 3/645 (0%)
Strand = Plus / Plus
Query: 88 acgcttcataaagtcctgctgtctcactgttttcttcgccatcttgctcaaaagggggct 147
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2146 acgcttcataaagtcctgctgtctcactgttttcttcgccatcttgctcaaaagggggct 2205
Query: 148 tgttttattgtcttgtattggggcaacctagtctactggttgtctactcatgactggact 207
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2206 tgttttattgtcttgtattggggcaacctagtctactggttgtctactcatgactggact 2265
Query: 208 ctctttccatgtcgatgagatgagcttcatatttctaagatcaaggtaagagcatcacta 267
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2266 ctctttccatgtcgatgagatgagcttcatatttctaagatcaaggtaagagcatcacta 2325
Query: 268 gtaccaaatttttcaagacattggaaaatttcttttgtagatcacgtgaactggttttcg 327
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2326 gtaccaaatttttcaagacattggaaaatttcttttgtagatcacgtgaactggttttcg 2385
Query: 328 atatgaacataaattcagatcattatacatatataagacagtatcactactatggcgttt 387
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2386 atatgaacataaattcagatcattatacatatataagacagtatcactactatggcgttt 2445
Query: 388 ccaaagggattatatcgttaccggcaggaccataagccatattctgctagcttcaaaggt 447
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2446 ccaaagggattatatcgttaccggcaggaccataagccatattctgctagcttcaaaggt 2505
Query: 448 atcacggagcaatattgtgaattatgagttcaagacagttgagaagattaggaaaggatg 507
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2506 atcacggagcaatattgtgaattatgagttcaagacagttgagaagattaggaaaggatg 2565
Query: 508 atttatagacgactttgctcaagctaacatcgaaagctagctcatcgtcaccagccctgg 567
||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 2566 atttagagacgactttgctcaagctaacatcgaaagctagctcatcgtcaccagccttgg 2625
Query: 568 aaaatgaagatgaatccccctgctc-accaacagtaactagctcaaatatgtttatgtta 626
||||||||||||||| ||| |||| ||||||||||||||||||||||||||||||||||
Sbjct: 2626 aaaatgaagatgaat-ccctggctcaaccaacagtaactagctcaaatatgtttatgtta 2684
Query: 627 atggatgatgatgatgaggaagatgaagatgaagaggaagaggaa-aatcggctgtctca 685
||||||||||||||||||||||| ||||| ||||||||||||||| || |||||||||||
Sbjct: 2685 atggatgatgatgatgaggaagaggaagaggaagaggaagaggaagaagcggctgtctca 2744
Query: 686 ccagtagaagatgagtctccaattattaagctggagactaaatct 730
|||||||| || ||||||||||| |||||||| ||||||||||||
Sbjct: 2745 ccagtagaggaggagtctccaataattaagctagagactaaatct 2789
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 14,656
Number of Sequences: 1807
Number of extensions: 14656
Number of successful extensions: 396
Number of sequences better than 1.0e-20: 1
length of query: 941
length of database: 10,358,551
effective HSP length: 16
effective length of query: 925
effective length of database: 10,329,639
effective search space: 9554916075
effective search space used: 9554916075
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)