BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC40ZB05RM1.SCF screened BAC_end
(903 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1588 1179 0.0
>3x_Contig1588
Length = 14692
Score = 1179 bits (595), Expect = 0.0
Identities = 606/610 (99%)
Strand = Plus / Minus
Query: 39 gctttggcagattccaaatcctctggaacaaaccaatctctttcgtgaatcgacggatca 98
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5730 gctttggcagattccaaatcctctggaacaaaccaatctctttcgtgaatcgacggatca 5671
Query: 99 gtttccggtgtacgcacatccttgtatacaggaacgttgatacaaactttctcaccacgt 158
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5670 gtttccggtgtacgcacatccttgtatacaggaacgttgatacaaactttctcaccacgt 5611
Query: 159 ctagtcctaatattggctgtcaacgtggggaacctagcgtgcctattgataatctcatcg 218
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5610 ctagtcctaatattggctgtcaacgtggggaacctagcgtgcctattgataatctcatcg 5551
Query: 219 ggtaaaaacagcgacctactagccgaatttttatgatcccatgggttcttcaaattcgta 278
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5550 ggtaaaaacagcgacctactagccgaatttttatgatcccatgggttcttcaaattcgta 5491
Query: 279 aaattgtcacgacccatgcgtgggaaaacagccaacgacaacggagtcaccaagttcacg 338
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5490 aaattgtcacgacccatgcgtgggaaaacagccaacgacaacggagtcaccaagttcacg 5431
Query: 339 tcgttaaatttcttcaatttctgttctgccacggccctgcgcatctgcatgttcctctca 398
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5430 tcgttaaatttcttcaatttctgttctgccacggccctgcgcatctgcatgttcctctca 5371
Query: 399 acctctgcaccctcgaagtccttatatggcttcgcaggtgtcgcctccaacataaaccga 458
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5370 acctctgcaccctcgaagtccttatatggcttcgcaggtgtcgcctccaacataaaccga 5311
Query: 459 ccgtactcgggatggaaatgaacgttcaactcgtcacactcggcctggtattccgtattc 518
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5310 ccgtactcgggatggaaatgaacgttcaactcgtcacactcggcctggtattccgtattc 5251
Query: 519 aactgaaccaaaacctcatcatgtttcacactaagaacaacgttctcattagcctcatcg 578
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5250 aactgaaccaaaacctcatcatgtttcacactaagaacaacgttctcattagcctcatcg 5191
Query: 579 aactcacaaatcatatactcgacttcatctncccagtacatttcatcgccgtctttagac 638
|||||||||||||||||||||||||||||| ||||||||| ||||||||||||| |||||
Sbjct: 5190 aactcacaaatcatatactcgacttcatctccccagtacaattcatcgccgtctctagac 5131
Query: 639 tcaacacttt 648
||| ||||||
Sbjct: 5130 tcagcacttt 5121
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 20,600
Number of Sequences: 1807
Number of extensions: 20600
Number of successful extensions: 3844
Number of sequences better than 1.0e-20: 1
length of query: 903
length of database: 10,358,551
effective HSP length: 16
effective length of query: 887
effective length of database: 10,329,639
effective search space: 9162389793
effective search space used: 9162389793
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)