BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC40ZB06FM1.SCF screened BAC_end
(972 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1617 1300 0.0
>3x_Contig1617
Length = 15119
Score = 1300 bits (656), Expect = 0.0
Identities = 745/766 (97%), Gaps = 7/766 (0%)
Strand = Plus / Minus
Query: 87 ccaagaagggcggtgaagcagcagcaaagaaggatggtaaggccgataaacaaccaagag 146
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14759 ccaagaagggcggtgaagcagcagcaaagaaggatggtaaggccgataaacaaccaagag 14700
Query: 147 gtaagccagatgaagaaactttaaagaaattgagagaagaagctaaggcaaagaaggctg 206
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14699 gtaagccagatgaagaaactttaaagaaattgagagaagaagctaaggcaaagaaggctg 14640
Query: 207 ccaagaaggccgccaatgcccaacaagcccaagcaccagcccaagagtctgccaaaccat 266
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14639 ccaagaaggccgccaatgcccaacaagcccaagcaccagcccaagagtctgccaaaccat 14580
Query: 267 ctccaggtgtaattgatttccgtgttggtttcattcaaaaggctatcaagcatccagatg 326
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14579 ctccaggtgtaattgatttccgtgttggtttcattcaaaaggctatcaagcatccagatg 14520
Query: 327 ctgactctctatatgtttctaccatcgatgttggtgatgaagagggtccaagaaccgttt 386
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14519 ctgactctctatatgtttctaccatcgatgttggtgatgaagagggtccaagaaccgttt 14460
Query: 387 gttctggtctagtgaaatacttcccattggaagctatgcaagaacgttatgtcgttgttg 446
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14459 gttctggtctagtgaaatacttcccattggaagctatgcaagaacgttatgtcgttgttg 14400
Query: 447 tttgcaacttaaagccagttaatatgaggggtatcaaatccactgctatggttctttgtg 506
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14399 tttgcaacttaaagccagttaatatgaggggtatcaaatccactgctatggttctttgtg 14340
Query: 507 gttctgatgaaaacaacgtcgaatttgttgaacccccagctggatccaaggctggtgaca 566
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14339 gttctgatgaaaacaacgtcgaatttgttgaacccccagctggatccaaggctggtgaca 14280
Query: 567 aggtgttctttgaaggtttcggcgatgaagaacctataaaacaattgaatccaaagaaga 626
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14279 aggtgttctttgaaggtttcggcgatgaagaacctataaaacaattgaatccaaagaaga 14220
Query: 627 agatttgggaatcatttgc-accacattttcagtactaatgaacaacnntgagttatttt 685
||||||||||| || |||| |||||| |||||||||||||||||||| ||||||||
Sbjct: 14219 agatttgggaa-caattgcaaccaca-tttcagtactaatgaacaacttgaggttatttt 14162
Query: 686 caaggatgaagatgacaaggctcaacaaatttagaagctaactaac-aaaacggagatgc 744
||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||
Sbjct: 14161 caaggatgaagatgacaaggctcaacaaattagaaagctaactaacaaaaacggagatgc 14102
Query: 745 cctcaaagttgctt-cattgctaacgcttggtgttcgttagaaaatatttagtagacaac 803
| |||||||||||| |||||||||||||| ||||||||||||||||||| ||||||||||
Sbjct: 14101 cttcaaagttgcttccattgctaacgctt-gtgttcgttagaaaatattaagtagacaac 14043
Query: 804 atttaaacggtcatgctagttatttggctgattttatttaacctaa 849
|| |||||| ||||||||||||||| ||||||||||| ||||||||
Sbjct: 14042 atataaacgttcatgctagttattt-gctgattttatataacctaa 13998
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7856
Number of Sequences: 1807
Number of extensions: 7856
Number of successful extensions: 63
Number of sequences better than 1.0e-20: 1
length of query: 972
length of database: 10,358,551
effective HSP length: 16
effective length of query: 956
effective length of database: 10,329,639
effective search space: 9875134884
effective search space used: 9875134884
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)