BLASTN 2.2.3 [May-13-2002]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FJ0AC40ZB06RM1.SCF screened BAC_end
         (963 letters)

Database: Klactis 3X assemblage 11/02 
           1807 sequences; 10,358,551 total letters

Searching....done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

3x_Contig1423                                                        1421   0.0  

>3x_Contig1423 
          Length = 8454

 Score = 1421 bits (717), Expect = 0.0
 Identities = 783/800 (97%), Gaps = 4/800 (0%)
 Strand = Plus / Plus

                                                                       
Query: 47  cttcaattgctaaaatgaaagccttgattgaaaattttgactacgagtccatcgtagcga 106
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 194 cttcaattgctaaaatgaaagccttgattgaaaattttgactacgagtccatcgtagcga 253

                                                                       
Query: 107 tacaaaaagaatgccaagtcattagagagttcactaataagattagaatgagaatgatta 166
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 254 tacaaaaagaatgccaagtcattagagagttcactaataagattagaatgagaatgatta 313

                                                                       
Query: 167 aacatgattgcattgacatccaaaataatagtgacatttacataaatgaaattattccac 226
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 314 aacatgattgcattgacatccaaaataatagtgacatttacataaatgaaattattccac 373

                                                                       
Query: 227 cgacatggtttgaattcaaaagggaaggtccaaagtattgcgttcattgcgagtgtgtgg 286
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 374 cgacatggtttgaattcaaaagggaaggtccaaagtattgcgttcattgcgagtgtgtgg 433

                                                                       
Query: 287 agactattgaatggcgtaacggtccgtggggtaaagcgactttgtgtaatgcatgtggtt 346
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 434 agactattgaatggcgtaacggtccgtggggtaaagcgactttgtgtaatgcatgtggtt 493

                                                                       
Query: 347 tgtggtatcgcaaattgaagaaaaaatttaccgcagaacaatcagcaataataatggagg 406
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 494 tgtggtatcgcaaattgaagaaaaaatttaccgcagaacaatcagcaataataatggagg 553

                                                                       
Query: 407 agaaaagactcttttccaataaacatgataggaaagagttttctaaatttgatgcagatg 466
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 554 agaaaagactcttttccaataaacatgataggaaagagttttctaaatttgatgcagatg 613

                                                                       
Query: 467 ataaaagactaaagatcattaaggactcattgattgaccggataaacaaattcataaagg 526
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 614 ataaaagactaaagatcattaaggactcattgattgaccggataaacaaattcataaagg 673

                                                                       
Query: 527 aggtagagttatgcaagagtactgctgccaagctaaagcatataaaagcataagatgata 586
           |||||||||||||||||||||||||||||||||||||||| ||||||||| |||| ||||
Sbjct: 674 aggtagagttatgcaagagtactgctgccaagctaaagcaaataaaagcaaaagaggata 733

                                                                       
Query: 587 tggatcagaaagtgacacctcgggatatatacaagtacgattcaatttctcgtatatgtt 646
           ||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||
Sbjct: 734 tggatcagaaagtgacacctcgggaaataaacaagtacgattcaatttctcgtatatgtt 793

                                                                       
Query: 647 gaatgagcagtttagctgacttc-aaatagattgattggaaa-gtttatatcatttcaca 704
           ||||||||||||||||||||||| |||||||||||||||||| ||||||||||||  |||
Sbjct: 794 gaatgagcagtttagctgacttcaaaatagattgattggaaaggtttatatcattcaaca 853

                                                                       
Query: 705 agatatagagctcaaatttttcagttgcccagttttcaccagataacatacaagnagtcg 764
           ||||||||||||||||||||||||||||||||| | |||||||||||| || || |||||
Sbjct: 854 agatatagagctcaaatttttcagttgcccagtatacaccagataacaaaccaggagtcg 913

                                                                       
Query: 765 catcatttttccactt-agcattgcaacagatgacttatttaagtttgtgacctttatca 823
           |||||||||||||||| |||||||||||||||||||||||||||||||| ||| ||||||
Sbjct: 914 catcatttttccacttaagcattgcaacagatgacttatttaagtttgt-acccttatca 972

                               
Query: 824 tcttcacaaaggtttttcaa 843
           ||||||||||||||||||||
Sbjct: 973 tcttcacaaaggtttttcaa 992


  Database: Klactis 3X assemblage 11/02
    Posted date:  Nov 27, 2002 12:23 PM
  Number of letters in database: 10,358,551
  Number of sequences in database:  1807
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 8360
Number of Sequences: 1807
Number of extensions: 8360
Number of successful extensions: 64
Number of sequences better than 1.0e-20: 1
length of query: 963
length of database: 10,358,551
effective HSP length: 16
effective length of query: 947
effective length of database: 10,329,639
effective search space: 9782168133
effective search space used: 9782168133
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)