BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC40ZB07FM1.SCF screened BAC_end
(936 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1707 1271 0.0
>3x_Contig1707
Length = 16216
Score = 1271 bits (641), Expect = 0.0
Identities = 740/769 (96%), Gaps = 3/769 (0%)
Strand = Plus / Minus
Query: 88 aaagacagttcagagtcaattttctaaaatcaagatgttacgccgatttactattgtaga 147
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13862 aaagacagttcagagtcaattttctaaaatcaagatgttacgccgatttactattgtaga 13803
Query: 148 tatcgaaaatgaagatgaagataatacgcacaaagactatatcgagcacttgtactgcat 207
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13802 tatcgaaaatgaagatgaagataatacgcacaaagactatatcgagcacttgtactgcat 13743
Query: 208 attaaaccaaataccttgtgagggaacagatttccaatcattgttaagctttgtgaatac 267
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13742 attaaaccaaataccttgtgagggaacagatttccaatcattgttaagctttgtgaatac 13683
Query: 268 ttcaccattcctaatgaaacttaaactttggaagctgcttctcaactatttcgccagtag 327
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13682 ttcaccattcctaatgaaacttaaactttggaagctgcttctcaactatttcgccagtag 13623
Query: 328 aaaagaccaacttaggttccaaaactgttttttcagttcgatcaagtttttactagctag 387
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13622 aaaagaccaacttaggttccaaaactgttttttcagttcgatcaagtttttactagctag 13563
Query: 388 attgtcctctgaagagtatcaaatacaatcacaacttcaacgccagcaaacccttctttc 447
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13562 attgtcctctgaagagtatcaaatacaatcacaacttcaacgccagcaaacccttctttc 13503
Query: 448 tacgttaacacacatcggggagttttcaaaacggttctttcaagttctatgtgataactg 507
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13502 tacgttaacacacatcggggagttttcaaaacggttctttcaagttctatgtgataactg 13443
Query: 508 ggatatgtcattaaagaatcctagcagagaccagctacaggttttagtctcaattttcag 567
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13442 ggatatgtcattaaagaatcctagcagagaccagctacaggttttagtctcaattttcag 13383
Query: 568 gcttctataccctttagttttctatgaaacgttgacagataagaacgcatcattgaaatc 627
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 13382 gcttctataccctttagttttctatgaaacgttgacagaaaagaacgcatcattgaaatc 13323
Query: 628 cttctttcagaa-gcagttaaatcttctatcacgattcaggatttctttttgacagtggc 686
|||||| |||| ||||||||||||||||||||||| |||||| |||| |||||||||||
Sbjct: 13322 cttcttcaagaaggcagttaaatcttctatcacgatacaggatatcttcttgacagtggc 13263
Query: 687 attgctcatgatcttatgccacaaattcattacttttgagaaagaaaacgcaaaagagaa 746
|| |||||||||||||||||||||||||||||| || |||||||||||||||||||| |
Sbjct: 13262 atcgctcatgatcttatgccacaaattcattacattagagaaagaaaacgcaaaagaaga 13203
Query: 747 tttccctggtagcattattgacttataattagctttacatatgcttgcttggcaag-ttg 805
||| |||||||||||||||||||| || |||||||||||||||||| ||||||| |||
Sbjct: 13202 attcactggtagcattattgacttaatatcagctttacatatgcttgc-tggcaagtttg 13144
Query: 806 aattttggggaaaatttgatgggaacttctttaaaagaccagaaaagct 854
| ||||| | | ||||||||| |||||||| ||| || |||||||||
Sbjct: 13143 agttttgtgatagatttgatggaaacttcttaaaagtacaagaaaagct 13095
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7577
Number of Sequences: 1807
Number of extensions: 7577
Number of successful extensions: 46
Number of sequences better than 1.0e-20: 1
length of query: 936
length of database: 10,358,551
effective HSP length: 16
effective length of query: 920
effective length of database: 10,329,639
effective search space: 9503267880
effective search space used: 9503267880
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)