BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC40ZB07RM1.SCF screened BAC_end
(947 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1795 1205 0.0
>3x_Contig1795
Length = 38452
Score = 1205 bits (608), Expect = 0.0
Identities = 723/751 (96%), Gaps = 9/751 (1%)
Strand = Plus / Plus
Query: 38 aaaaccttggcatgaaacatcggagtgtacgctaatgtagcaccatatttacgagataaa 97
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 26404 aaaagcttggcatgaaacatcggagtgtacgctaatgtagcaccatatttacgagataaa 26463
Query: 98 attctccatgccagttccgactgatctaccatcggtgccactattttcgagggcttaccg 157
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 26464 attctccatgccagttccgactgatctaccatcggtgccactattttcgagggcttaccg 26523
Query: 158 atcttctcgaacaactgtcttccgtttaacttatctgatgtcatattgaatcggaataaa 217
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 26524 atcttctcgaacaactgtcttccgtttaacttatctgatgtcatattgaatcggaataaa 26583
Query: 218 ctattcaaattcttggatacaaaaggcaacaacttgtatattattgaaagatgacaacaa 277
| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 26584 cgactcaaattcttggatacaaaaggcaacaacttgtatattattgaaagatgacaacaa 26643
Query: 278 cccccttatgtctttcagaacctagaccactcctgaactgctcgaatcgtctttacaccc 337
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 26644 cccccttatgtctttcagaacctagaccactcctgaactgctcgaatcgtctttacaccc 26703
Query: 338 aacgacgtatttgacttagctcatcgccgatttttcactttttttcatttcaagattaaa 397
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 26704 aacgacgtatttgacttagctcatcgccgatttttcac-ttttttcatttcaagattaaa 26762
Query: 398 gatcggttctttttggaaaacagacagtgatgtcggtatagtcgcataagataacgacaa 457
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 26763 gatcggttctttttggaaaacagacagtgatgtcggtatagtcgcataagataacgacaa 26822
Query: 458 tataaattttagtttagaagtagcactgtactgtacaaatatttatttattacttgatag 517
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 26823 tataaattttagtttagaagtagcactgtactgtacaaatatttatttattacttgatag 26882
Query: 518 aaagaagtcaaaaatgttgtatttgatgctgaaagggcagcggtcgcggggtcatttggg 577
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 26883 aaagaagtcaaaaatgttgtatttgatgctgaaagggcagcggtcgcggggtcatttggg 26942
Query: 578 ggtcattaaaaattctatagtacagtattggatttctttccagtttagtatcaattttct 637
|||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||
Sbjct: 26943 ggtcattaaaaattctatagtacagtattgtatttctttcagttttagtatcaattttct 27002
Query: 638 gttgaatgaagttagattggcattttgacctgaaagagtaaccgcgattgcatggaaaag 697
|||| ||||||||||| ||||||||||||||||| ||||| |||||||||| ||||||
Sbjct: 27003 gttgtatgaagttaga-tggcattttgacctgaagaagtaa-cgcgattgcaatgaaaag 27060
Query: 698 tggggatgggggattattgccgtcgccggcgttttcatcattatttcggtaacgtgaagt 757
||||||| ||||| || ||| |||| ||||||||||||||| ||| ||||||||||||
Sbjct: 27061 tggggat-ggggaataatgcggtcg-cggcgttttcatcataatt--cgtaacgtgaagt 27116
Query: 758 ttggtgaaacgttgtttaatagctctcgctt 788
| |||||||||||| | |||||||||||||
Sbjct: 27117 at-gtgaaacgttgtat-atagctctcgctt 27145
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7600
Number of Sequences: 1807
Number of extensions: 7600
Number of successful extensions: 51
Number of sequences better than 1.0e-20: 1
length of query: 947
length of database: 10,358,551
effective HSP length: 16
effective length of query: 931
effective length of database: 10,329,639
effective search space: 9616893909
effective search space used: 9616893909
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)