BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC40ZB09FM1.SCF screened BAC_end
(946 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1726 1122 0.0
>3x_Contig1726
Length = 20144
Score = 1122 bits (566), Expect = 0.0
Identities = 661/687 (96%), Gaps = 5/687 (0%)
Strand = Plus / Minus
Query: 91 tgttgctgttgccatcaaaagagattgtggataatttctgcggccggatcctagtgtgtc 150
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9261 tgttgctgttgccatcaaaagagattgtggataatttctgcggccggatcctagtgtgtc 9202
Query: 151 tggaataacgtcaagcgtcatacatggccaaggaacgttaactgtatgtaacatttcgta 210
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9201 tggaataacgtcaagcgtcatacatggccaaggaacgttaactgtatgtaacatttcgta 9142
Query: 211 gactgtaggatcatcttccaaaacttcatcaggacccaaaggcttatataaatgtggcaa 270
||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 9141 gactgtaggatcagcttccaaaacttcatcaggacccaaaggcttagataaatgtggcaa 9082
Query: 271 ccacaattgttcactttgctcttgttcagcattttgatccttttcgactagctcttgagc 330
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9081 ccacaattgttcactttgctcttgttcagcattttgatccttttcgactagctcttgagc 9022
Query: 331 ttgttgttgcttcttttccagaaactcatcgttctcaatgtttccatctaattcttcttc 390
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9021 ttgttgttgcttcttttccagaaactcatcgttctcaatgtttccatctaattcttcttc 8962
Query: 391 attatcttcttcatcgtcaatttcgatgatttcgccatcactctcgaaatcatcaccata 450
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8961 attatcttcttcatcgtcaatttcgatgatttcgccatcactctcgaaatcatcaccata 8902
Query: 451 agggtcctcgaattcacccatttcaacatcttgctcattggcattcactgcattggccga 510
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8901 agggtcctcgaattcacccatttcaacatcttgctcattggcattcactgcattggccga 8842
Query: 511 tggtacttcaccagcctctgtcttagaatggacatttcgatcatcgacgttttctagtcc 570
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 8841 tggtacttcaccagcctctgtcttagaatggacaattcgatcatcgacgttttctagtcc 8782
Query: 571 ttcatcgnaagcagttctctaggacatnctgganttgttctattgaagtacagtttgtca 630
||||||| |||||||||||| |||||| ||||| ||||||||||||||||||||||||||
Sbjct: 8781 ttcatcggaagcagttctcttggacatcctggaattgttctattgaagtacagtttgtca 8722
Query: 631 ctgattcattc-agggcagcaacttttg-caatagatcattactggtacataactttact 688
|||||||| || ||| |||||||||||| |||||||||| |||||||||||||||| |
Sbjct: 8721 ctgattcaatcaaggccagcaacttttgccaatagatcaatactggtacataacttactt 8662
Query: 689 atagattccttactatgtaggggttggatcatttcatcgcatcgttccaat-aatttttc 747
||||||||||||||||||| | ||| |||||| ||||||||||||| |||| || |||||
Sbjct: 8661 atagattccttactatgta-gtgtttgatcatctcatcgcatcgtttcaataaaattttc 8603
Query: 748 cattttgg-aaaagaaatcatttggtc 773
|| |||| |||||||||||| |||||
Sbjct: 8602 aatattggaaaaagaaatcatgtggtc 8576
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 8240
Number of Sequences: 1807
Number of extensions: 8240
Number of successful extensions: 69
Number of sequences better than 1.0e-20: 1
length of query: 946
length of database: 10,358,551
effective HSP length: 16
effective length of query: 930
effective length of database: 10,329,639
effective search space: 9606564270
effective search space used: 9606564270
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)