BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC40ZB09RM1.SCF screened BAC_end
(954 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1629 1144 0.0
>3x_Contig1629
Length = 12481
Score = 1144 bits (577), Expect = 0.0
Identities = 706/744 (94%), Gaps = 5/744 (0%)
Strand = Plus / Minus
Query: 49 ctttgcatgctgtaattttatagactagttttggagtactcaagaaagtgtttacacttt 108
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9122 ctttgcatgctgtaattttatagactagttttggagtactcaagaaagtgtttacacttt 9063
Query: 109 ctttcactatcccatcggctggttcataatatttcctgttgttttgacaactatctttaa 168
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9062 ctttcactatcccatcggctggttcataatatttcctgttgttttgacaactatctttaa 9003
Query: 169 atatgaaaatattagcatttgaataaataataattacacgcgcttccttcttgcaattta 228
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 9002 atatgaaaatattagcatttgaataaataataattacacgcgcttccttcttgcaagtta 8943
Query: 229 tttttctggagaagcactgaagagcctccgcggtcttcatcaacgctttcttctcttgct 288
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8942 tttttctggagaagcactgaagagcctccgcggtcttcatcaacgctttcttctcttgct 8883
Query: 289 ctttttccgatgattggagtactgtttcctacacatgtcactacaaaaccatttctcatt 348
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8882 ctttttccgatgattggagtactgtttcctacacatgtcactacaaaaccatttctcatt 8823
Query: 349 gggtttgggtgcggctgataatcctacacaggggtaatggaacncattcgatggcacaag 408
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 8822 gggtttgggtgcggctgataatcctacacaggggtaatggaac-cattcgatggcacaag 8764
Query: 409 attcattatcacaagcaaccatgggtccatacgacacatctctacagatacagtacgtct 468
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 8763 attcattatcacaagcaaccatgggtccatacgacacatctctacagaaacagtacgtct 8704
Query: 469 ctgtctctggcttgtgcgtcttatcatgattcacatgttcttgctgaatcagtttctgtt 528
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8703 ctgtctctggcttgtgcgtcttatcatgattcacatgttcttgctgaatcagtttctgtt 8644
Query: 529 ccctttctgcctctgggtaccttgatttcatagtgatcttaatcttgatcggtttgtgat 588
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8643 ccctttctgcctctgggtaccttgatttcatagtgatcttaatcttgatcggtttgtgat 8584
Query: 589 gaagcaaaagtttcaattttcggtggttctt-aagtgactatcgtaccttgcctt-atct 646
|| ||||| |||||||||| | || ||||| ||||||||||||||||||||||| ||||
Sbjct: 8583 gaggcaaaggtttcaatttcggttgtttcttcaagtgactatcgtaccttgccttaatct 8524
Query: 647 ganaggatcgctccatttcttgnttttcaaaatggagccgnggaatgtcctggccgtact 706
|| || ||||||||| |||||| |||||||||| |||||| |||||| || ||||||||
Sbjct: 8523 gagagaatcgctccaattcttgtttttcaaaattgagccgt-gaatgttcttgccgtact 8465
Query: 707 aaccttanaaaatgttgcgcttgtcgcaacatttttttctgaatgaactncatttttatt 766
||| || | ||||||||||||||||| || | | |||||||||| | ||| | ||||
Sbjct: 8464 aactctaagagatgttgcgcttgtcgcagca-tctcttctgaatgacatccatctctatt 8406
Query: 767 tgtatcaccttttttcaatgattg 790
||||||||| | | |||||||||
Sbjct: 8405 agtatcacctatatccaatgattg 8382
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 12,197
Number of Sequences: 1807
Number of extensions: 12197
Number of successful extensions: 64
Number of sequences better than 1.0e-20: 1
length of query: 954
length of database: 10,358,551
effective HSP length: 16
effective length of query: 938
effective length of database: 10,329,639
effective search space: 9689201382
effective search space used: 9689201382
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)