BLASTN 2.2.3 [May-13-2002]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FJ0AC40ZB10RM1.SCF screened BAC_end
         (974 letters)

Database: Klactis 3X assemblage 11/02 
           1807 sequences; 10,358,551 total letters

Searching....done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

3x_Contig1288                                                        1055   0.0  

>3x_Contig1288 
          Length = 8015

 Score = 1055 bits (532), Expect = 0.0
 Identities = 631/656 (96%), Gaps = 6/656 (0%)
 Strand = Plus / Plus

                                                                        
Query: 44   tttttaccaggtctgcttgacatcaacggtaaagaaatcaaaaagtcaatgaccccaact 103
            |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2426 ttttcaccaggtctgcttgacatcaacggtaaagaaatcaaaaagtcaatgaccccaact 2485

                                                                        
Query: 104  gatttacgtcgcttagaagaagagaatatgaggcaaagattaaatgttgatttggcccca 163
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2486 gatttacgtcgcttagaagaagagaatatgaggcaaagattaaatgttgatttggcccca 2545

                                                                        
Query: 164  ttctacgagaaagttttgaaatgggactacaaaagaaccagtgagtacccaaccgataca 223
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2546 ttctacgagaaagttttgaaatgggactacaaaagaaccagtgagtacccaaccgataca 2605

                                                                        
Query: 224  gaaacatcctactctgacgtgaaggactcattttcatcggtctctgattatcaaaaagtc 283
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2606 gaaacatcctactctgacgtgaaggactcattttcatcggtctctgattatcaaaaagtc 2665

                                                                        
Query: 284  atggaaccgcttttgctgctagaatgttggcagggattgtgctcagctcgagacagggaa 343
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2666 atggaaccgcttttgctgctagaatgttggcagggattgtgctcagctcgagacagggaa 2725

                                                                        
Query: 344  gaacagaaaagctttagtttcattgtaggaaataggacggttgtttctgacttttacgag 403
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2726 gaacagaaaagctttagtttcattgtaggaaataggacggttgtttctgacttttacgag 2785

                                                                        
Query: 404  gtatatgcatcaatcaacaaaaatgttgttcgtgacacaggtatcaatgactcggattta 463
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2786 gtatatgcatcaatcaacaaaaatgttgttcgtgacacaggtatcaatgactcggattta 2845

                                                                        
Query: 464  attgttcttggctatttccccgactcttctttttcaaagccattgacagataaagatttc 523
            ||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||
Sbjct: 2846 attgttcttggctatttccccgactcttcttcttcaaagccattgacagataaagaattc 2905

                                                                        
Query: 524  aaacgatcaaatcacacttgtttagccaaaatttaagaaattaaggactcgaaaggtgaa 583
            ||||||||||||||||||||||||||||||||| |||| || ||| |||||||||||| |
Sbjct: 2906 aaacgatcaaatcacacttgtttagccaaaattaaagagataaagaactcgaaaggtg-a 2964

                                                                        
Query: 584  aaattgggcccttactttcaggattctttgcagtcattaaattctcaaatttttaacctt 643
            ||||  || |||||| |||||||||| | ||||||| ||||||||||||| ||| | |||
Sbjct: 2965 aaatatggaccttacattcaggattcatcgcagtca-taaattctcaaatcttttaactt 3023

                                                                    
Query: 644  tacgtttctg-aatttatgcctttgaaagtcatgccaatgaccccaagtcgaaaga 698
            |||| ||||| |||| ||| ||||||||||||||| ||||||| | ||||||||||
Sbjct: 3024 tacg-ttctgaaattcatg-ctttgaaagtcatgcaaatgaccac-agtcgaaaga 3076


  Database: Klactis 3X assemblage 11/02
    Posted date:  Nov 27, 2002 12:23 PM
  Number of letters in database: 10,358,551
  Number of sequences in database:  1807
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 10,709
Number of Sequences: 1807
Number of extensions: 10709
Number of successful extensions: 68
Number of sequences better than 1.0e-20: 1
length of query: 974
length of database: 10,358,551
effective HSP length: 16
effective length of query: 958
effective length of database: 10,329,639
effective search space: 9895794162
effective search space used: 9895794162
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)