BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC40ZB11FM1.SCF screened BAC_end
(922 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1001 1281 0.0
>3x_Contig1001
Length = 4198
Score = 1281 bits (646), Expect = 0.0
Identities = 699/714 (97%), Gaps = 2/714 (0%)
Strand = Plus / Minus
Query: 86 caccaccgtgccaaatgcaccttgcccaattcgcttatattcctttacgagcatttctcg 145
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4135 caccaccgtgccaaatgcaccttgcccaattcgcttatattcctttacgagcatttctcg 4076
Query: 146 cttgacattggatttattactgatgacatcatgagccacgtattcatctaatctttgcat 205
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4075 cttgacattggatttattactgatgacatcatgagccacgtattcatctaatctttgcat 4016
Query: 206 agacatggcgattcgcaataaggggaaagaagacagatagtaacagatacaaaagcgatg 265
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4015 agacatggcgaatcgcaataaggggaaagaagacagatagtaacagatacaaaagcgatg 3956
Query: 266 cgatatctatcgaataagaaaaaaattaccactttttgttcgttgtatttcgctcaagtc 325
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3955 cgatatctatcgaataagaaaaaaattaccactttttgttcgttgtatttcgctcaagtc 3896
Query: 326 ttcaaattacaaacttcaaccgttattttgcaagcaaaccttagaatatagatatgttcc 385
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3895 ttcaaattacaaacttcaaccgttattttgcaagcaaaccttagaatatagatatgttcc 3836
Query: 386 taacggatgtaacgtggatggttcaggaaaaaaagggaaatattgaattgtaatgaatca 445
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3835 taacggatgtaacgtggatggttcaggaaaaaaagggaaatattgaattgtaatgaatca 3776
Query: 446 ataaaatctgtattaaatgaattgatgaaatgaaatcgctaatattaataaaagcaacac 505
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3775 ataaaatctgtattaaatgaattgatgaaatgaaatcgctaatattaataaaagcaacac 3716
Query: 506 aacagggggaaaacactcttactcaagcaagtcaattagtcccttgcaacaagtgatgca 565
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3715 aacagggggaaaacactcttactcaagcaagtcaattagtcccttgcaacaagtgatgca 3656
Query: 566 gcagtgtctataatgtttcttcgcagtaaattcttcgcgctgcaatcgctcggcaaattc 625
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3655 gcagtgtctataatgtttcttcgcagtaaattcttcgcgctgcaatcgctcggcaaattc 3596
Query: 626 aacaactatgagtttccagaacttaaacgtttgagcacccttagcagtgttgtgtccgtt 685
|||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3595 aacaactagaagttcccagaacttaaacgtttgagcacccttagcagtgttgtgtccgtt 3536
Query: 686 atcagagaccctatttgtttacttgaaac-aggttccgggttatttttggtttggttttt 744
||||||||||||||||||| ||||||| |||||| || |||||||| ||||| |||||
Sbjct: 3535 atcagagaccctatttgttactttgaaacaaggttctggtttattttttgtttgtttttt 3476
Query: 745 cctaatttcctaaacctaaaattgattttcattttccggttttccaagaatctg 798
|||||||||||||| ||||||||||||||||| || ||||||||||||||||||
Sbjct: 3475 cctaatttcctaaaactaaaattgattttcatatt-cggttttccaagaatctg 3423
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7567
Number of Sequences: 1807
Number of extensions: 7567
Number of successful extensions: 53
Number of sequences better than 1.0e-20: 1
length of query: 922
length of database: 10,358,551
effective HSP length: 16
effective length of query: 906
effective length of database: 10,329,639
effective search space: 9358652934
effective search space used: 9358652934
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)