BLASTN 2.2.3 [May-13-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= FJ0AC40ZB11RM1.SCF screened BAC_end (901 letters) Database: Klactis 3X assemblage 11/02 1807 sequences; 10,358,551 total letters Searching....done Score E Sequences producing significant alignments: (bits) Value 3x_Contig1516 1279 0.0 >3x_Contig1516 Length = 8750 Score = 1279 bits (645), Expect = 0.0 Identities = 734/753 (97%), Gaps = 8/753 (1%) Strand = Plus / Minus Query: 46 cttgagtgattctcttgct-atggtcttttcaccttctctaacccagactcttgggtcgt 104 ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| Sbjct: 5500 cttgagtgattctcttgctcatggtcttttcaccttctctaacccagactcttgggtcgt 5441 Query: 105 agtacttcttgtttggagagtcttcaccggttgggttaccgactggggtcatcaagtagt 164 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 5440 agtacttcttgtttggagagtcttcaccggttgggttaccgactggggtcatcaagtagt 5381 Query: 165 ccttcttgttcaagacgtagtctctgataccggacaagtaagcgaattgacatttatgta 224 |||||||||||||||||||||||||||||||||||||||||||||||||||| | | ||| Sbjct: 5380 ccttcttgttcaagacgtagtctctgataccggacaagtaagcgaattgacagtca-gta 5322 Query: 225 tccaagttgacctttacgacaccgaaatcgatggcagtatggaagtccttggtggaggaa 284 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 5321 tccaagttgacctttacgacaccgaaatcgatggcagtatggaagtccttggtggaggaa 5262 Query: 285 ccggaaccaccgtggaagaccaagtacaatggcttgtcttctgccttcttgtttaattgc 344 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 5261 ccggaaccaccgtggaagaccaagtacaatggcttgtcttctgccttcttgtttaattgc 5202 Query: 345 ttagcagcgtagtcttggaaagtacccaacaattctggttttagggcagcggcgatcttg 404 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 5201 ttagcagcgtagtcttggaaagtacccaacaattctggttttagggcagcggcgatcttg 5142 Query: 405 taaacaccgtggacgttaccgaaggcactggcaatggagaagtttggagagatcttggac 464 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 5141 taaacaccgtggacgttaccgaaggcactggcaatggagaagtttggagagatcttggac 5082 Query: 465 aaagcttcgtggacagagaaaacagtttctggagtggtgtaaagtttgtcgttagaagta 524 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 5081 aaagcttcgtggacagagaaaacagtttctggagtggtgtaaagtttgtcgttagaagta 5022 Query: 525 ccttcgttgttgacaccatcttcttcaccaccggtgataccgatttccatttccaaccat 584 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 5021 ccttcgttgttgacaccatcttcttcaccaccggtgataccgatttccatttccaaccat 4962 Query: 585 tggtggatcttggccattctggtgaagtatttgacacatagaccaatgttttcctcatca 644 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 4961 tggtggatcttggccattctggtgaagtatttgacacatagaccaatgttttcctcatca 4902 Query: 645 gtttcttcggacatattcaacatgtgggaggagaacaatggtt-accgtgcttagcg-ag 702 ||||||||||||| || |||||||||||||||||||||||||| ||||||||||||| || Sbjct: 4901 gtttcttcggacaaatccaacatgtgggaggagaacaatggttcaccgtgcttagcgaag 4842 Query: 703 tatttctcgtcagcc-ttagctta-cattgaaccatggtagcatcttcttatcac-atga 759 |||| ||||||||| ||||| || ||| |||||||||||||| ||||||| ||| |||| Sbjct: 4841 tattcttcgtcagcctttagcataccatcgaaccatggtagcaacttcttagcacaatga 4782 Query: 760 tcggtgtgtagaacaact-ggattccgtaagct 791 |||||||||||||||||| |||| ||||||||| Sbjct: 4781 tcggtgtgtagaacaactgggataccgtaagct 4749 Database: Klactis 3X assemblage 11/02 Posted date: Nov 27, 2002 12:23 PM Number of letters in database: 10,358,551 Number of sequences in database: 1807 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 5808 Number of Sequences: 1807 Number of extensions: 5808 Number of successful extensions: 45 Number of sequences better than 1.0e-20: 1 length of query: 901 length of database: 10,358,551 effective HSP length: 16 effective length of query: 885 effective length of database: 10,329,639 effective search space: 9141730515 effective search space used: 9141730515 T: 0 A: 40 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 50 (99.6 bits)