BLASTN 2.2.3 [May-13-2002]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FJ0AC40ZB11RM1.SCF screened BAC_end
         (901 letters)

Database: Klactis 3X assemblage 11/02 
           1807 sequences; 10,358,551 total letters

Searching....done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

3x_Contig1516                                                        1279   0.0  

>3x_Contig1516 
          Length = 8750

 Score = 1279 bits (645), Expect = 0.0
 Identities = 734/753 (97%), Gaps = 8/753 (1%)
 Strand = Plus / Minus

                                                                        
Query: 46   cttgagtgattctcttgct-atggtcttttcaccttctctaacccagactcttgggtcgt 104
            ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 5500 cttgagtgattctcttgctcatggtcttttcaccttctctaacccagactcttgggtcgt 5441

                                                                        
Query: 105  agtacttcttgtttggagagtcttcaccggttgggttaccgactggggtcatcaagtagt 164
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5440 agtacttcttgtttggagagtcttcaccggttgggttaccgactggggtcatcaagtagt 5381

                                                                        
Query: 165  ccttcttgttcaagacgtagtctctgataccggacaagtaagcgaattgacatttatgta 224
            |||||||||||||||||||||||||||||||||||||||||||||||||||| | | |||
Sbjct: 5380 ccttcttgttcaagacgtagtctctgataccggacaagtaagcgaattgacagtca-gta 5322

                                                                        
Query: 225  tccaagttgacctttacgacaccgaaatcgatggcagtatggaagtccttggtggaggaa 284
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5321 tccaagttgacctttacgacaccgaaatcgatggcagtatggaagtccttggtggaggaa 5262

                                                                        
Query: 285  ccggaaccaccgtggaagaccaagtacaatggcttgtcttctgccttcttgtttaattgc 344
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5261 ccggaaccaccgtggaagaccaagtacaatggcttgtcttctgccttcttgtttaattgc 5202

                                                                        
Query: 345  ttagcagcgtagtcttggaaagtacccaacaattctggttttagggcagcggcgatcttg 404
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5201 ttagcagcgtagtcttggaaagtacccaacaattctggttttagggcagcggcgatcttg 5142

                                                                        
Query: 405  taaacaccgtggacgttaccgaaggcactggcaatggagaagtttggagagatcttggac 464
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5141 taaacaccgtggacgttaccgaaggcactggcaatggagaagtttggagagatcttggac 5082

                                                                        
Query: 465  aaagcttcgtggacagagaaaacagtttctggagtggtgtaaagtttgtcgttagaagta 524
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5081 aaagcttcgtggacagagaaaacagtttctggagtggtgtaaagtttgtcgttagaagta 5022

                                                                        
Query: 525  ccttcgttgttgacaccatcttcttcaccaccggtgataccgatttccatttccaaccat 584
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5021 ccttcgttgttgacaccatcttcttcaccaccggtgataccgatttccatttccaaccat 4962

                                                                        
Query: 585  tggtggatcttggccattctggtgaagtatttgacacatagaccaatgttttcctcatca 644
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4961 tggtggatcttggccattctggtgaagtatttgacacatagaccaatgttttcctcatca 4902

                                                                        
Query: 645  gtttcttcggacatattcaacatgtgggaggagaacaatggtt-accgtgcttagcg-ag 702
            ||||||||||||| || |||||||||||||||||||||||||| ||||||||||||| ||
Sbjct: 4901 gtttcttcggacaaatccaacatgtgggaggagaacaatggttcaccgtgcttagcgaag 4842

                                                                        
Query: 703  tatttctcgtcagcc-ttagctta-cattgaaccatggtagcatcttcttatcac-atga 759
            ||||  ||||||||| ||||| || ||| |||||||||||||| ||||||| ||| ||||
Sbjct: 4841 tattcttcgtcagcctttagcataccatcgaaccatggtagcaacttcttagcacaatga 4782

                                             
Query: 760  tcggtgtgtagaacaact-ggattccgtaagct 791
            |||||||||||||||||| |||| |||||||||
Sbjct: 4781 tcggtgtgtagaacaactgggataccgtaagct 4749


  Database: Klactis 3X assemblage 11/02
    Posted date:  Nov 27, 2002 12:23 PM
  Number of letters in database: 10,358,551
  Number of sequences in database:  1807
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5808
Number of Sequences: 1807
Number of extensions: 5808
Number of successful extensions: 45
Number of sequences better than 1.0e-20: 1
length of query: 901
length of database: 10,358,551
effective HSP length: 16
effective length of query: 885
effective length of database: 10,329,639
effective search space: 9141730515
effective search space used: 9141730515
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)