BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC40ZB12FM1.SCF screened BAC_end
(949 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1091 1067 0.0
3x_Contig1300 682 0.0
>3x_Contig1091
Length = 4701
Score = 1067 bits (538), Expect = 0.0
Identities = 619/637 (97%), Gaps = 8/637 (1%)
Strand = Plus / Plus
Query: 87 gtgcaaaaccaccaatatttgtaatatatatatcgatgttttccgggggaatatagtctg 146
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3037 gtgcaaaaccaccaatatttgtaatatatatatcgatgttttccgggggaatatagtctg 3096
Query: 147 cgataggatttatggtttctaaggcaacagtacctactctatcattctcggttgtcggca 206
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3097 cgataggatttatggtttctaaggcaacagtacctactctatcattctcggttgtcggca 3156
Query: 207 agacattttgggatcctccaatttctaccattttctcgacatcgaatgggtataaaggag 266
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3157 agacattttgggatcctccaatttctaccattttctcgacatcgaatgggtataaaggag 3216
Query: 267 agagcttataaagaccagcaacagcaaagacaggtgttttgaactctcttgcacactcac 326
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3217 agagcttataaagaccagcaacagcaaagacaggtgttttgaactctcttgcacactcac 3276
Query: 327 atacagaggatacaccggcggtcgaagatatcgttccaccattagtgaaaacggttttag 386
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3277 atacagaggagacaccggcggtcgaagatatcgttccaccattagtgaaaacggttttag 3336
Query: 387 ctcctataataactttccctactctcgacatcaatgcaaatacagctgaatcagggatta 446
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3337 ctcctataataactttccctactctcgacatcaatgcaaatacagctgaatcagggatta 3396
Query: 447 caatagtctcaatgtcatgctcacttagttttttggcgaattcatgatccactgttgtat 506
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 3397 caatagtctcaatgtcatgctcacttagttttttggcgaattcatgagccactgttgtat 3456
Query: 507 tgttaggaaatccttcagtcactagatcagtaaaatttctattattacgttctctagcct 566
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 3457 tgttaggaaatccttcagtcactagaacagtaaaatttctattattacgttctctagcct 3516
Query: 567 tcaaa--gaaacgaggaa-cgtctttg-atctggagta-gtgtaagtaggatttctcgat 621
||||| ||||||| ||| |||||||| |||||||||| |||||||||||||||||||||
Sbjct: 3517 tcaaaaggaaacgaagaaccgtctttgaatctggagtaggtgtaagtaggatttctcgat 3576
Query: 622 catgaatcatttc-atagctatttgttgaat-ccttcatcgata-tttttatttcatcta 678
||||||||| ||| ||||||||||||||||| |||||||||||| |||||||||||||||
Sbjct: 3577 catgaatcaattcaatagctatttgttgaataccttcatcgatattttttatttcatcta 3636
Query: 679 tttaatcacgatttgattgaacattggtctgccttac 715
| ||||||| ||||||||||| |||||||||||||
Sbjct: 3637 taagatcacgaattgattgaacaatggtctgccttac 3673
>3x_Contig1300
Length = 6589
Score = 682 bits (344), Expect = 0.0
Identities = 569/635 (89%), Gaps = 8/635 (1%)
Strand = Plus / Minus
Query: 89 gcaaaaccaccaatatttgtaatatatatatcgatgttttccgggggaatatagtctgcg 148
||||| || |||||||| || ||||| ||||||||||||||||||||||||||||| ||
Sbjct: 661 gcaaagccgccaatattggtgatataaatatcgatgttttccgggggaatatagtcagca 602
Query: 149 ataggatttatggtttctaaggcaacagtacctactctatcattctcggttgtcggcaag 208
|| |||||||| |||||||| ||||| |||||||||||||||||||| ||||| |||||
Sbjct: 601 attggatttatcgtttctaaagcaacggtacctactctatcattctcagttgtaggcaat 542
Query: 209 acattttgggatcctccaatttctaccattttctcgacatcgaatgggtataaaggagag 268
|| || || |||||||||||||||||||| ||||| ||||||||||||||||| |||||
Sbjct: 541 acgttctgagatcctccaatttctaccatcttctcaacatcgaatgggtataatggagaa 482
Query: 269 agcttataaagaccagcaacagcaaagacaggtgttttgaactctcttgcacactcacat 328
|| ||||||||||||||||| ||||| ||||||||| ||||||||||||| |||||||||
Sbjct: 481 agtttataaagaccagcaacggcaaatacaggtgttctgaactctcttgcgcactcacat 422
Query: 329 acagaggatacaccggcggtcgaagatatcgttccaccattagtgaaaacggttttagct 388
|||||||| ||||| || |||||||||||||||||||| |||||||||||||||||||||
Sbjct: 421 acagaggagacaccagcagtcgaagatatcgttccaccgttagtgaaaacggttttagct 362
Query: 389 cctataataactttccctactctcgacatcaatgcaaatacagctgaatcagggattaca 448
|||||||| || ||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 cctataatgaccttccccactctcgacatcaatgcaaatacagctgaatcagggattaca 302
Query: 449 atagtctcaatgtcatgctcacttagttttttggcgaattcatgatccactgttgtattg 508
||||||||||||||||| ||||||| |||||| |||||||||||| |||| |||| |||
Sbjct: 301 atagtctcaatgtcatgttcacttaattttttagcgaattcatgagccacggttgcgttg 242
Query: 509 ttaggaaatccttcagtcactagatcagtaaaatttctattattacgttctctagccttc 568
||||| |||||||||||||||| | ||||||||||||||||||||| |||||||||||||
Sbjct: 241 ttagggaatccttcagtcactaaaacagtaaaatttctattattaccttctctagccttc 182
Query: 569 --aaagaaacgaggaac-gtctttga-tctggagta-gtgtaagtaggatttctcgatca 623
|| ||||||| |||| || || || ||||||||| | |||||||||||||| ||||||
Sbjct: 181 agaaggaaacgaagaacggttttagagtctggagtaggggtaagtaggatttcacgatca 122
Query: 624 tgaatcatttc-atagctatttgttgaat-ccttcatcgatattttt-atttcatctatt 680
||||||| ||| ||||||||||||||||| ||||||||||||||||| |||||||||||
Sbjct: 121 tgaatcaattcaatagctatttgttgaataccttcatcgatatttttaatttcatctata 62
Query: 681 taatcacgatttgattgaacattggtctgccttac 715
||||||| |||| |||||| |||| ||||||||
Sbjct: 61 agatcacgaattgactgaacaatggtttgccttac 27
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7104
Number of Sequences: 1807
Number of extensions: 7104
Number of successful extensions: 53
Number of sequences better than 1.0e-20: 2
length of query: 949
length of database: 10,358,551
effective HSP length: 16
effective length of query: 933
effective length of database: 10,329,639
effective search space: 9637553187
effective search space used: 9637553187
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)