BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC40ZB12RM1.SCF screened BAC_end
(956 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1548 1251 0.0
>3x_Contig1548
Length = 9830
Score = 1251 bits (631), Expect = 0.0
Identities = 683/698 (97%), Gaps = 2/698 (0%)
Strand = Plus / Plus
Query: 42 ctttatggaattgtttgatacgattttaataagtgctacgcgaaggaatttgtgttgaca 101
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 3306 ctttatggaattgtttgatacgataataataagtgctacgcgaaggaatttgtgttgaca 3365
Query: 102 catatgcatataaattttatatatgaatacttatgggagtcattttgtcagataaaatga 161
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3366 catatgcatataaatttcatatatgaatacttatgggagtcattttgtcagataaaatga 3425
Query: 162 tatgtaatgtcaattatgcgattttcttattggtgtttgtgaatccaatacccttgtatt 221
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 3426 tatgtaatgtcaattatgcgattttcttattggtgtttgtgaatccaatacccttg-att 3484
Query: 222 gttgcgattagatccgtagtgttatcatccactggcttcaagagtatttctgtaccgaaa 281
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3485 gttgcgattagatccgtagtgttatcatccactggcttcaagagtatttctgtaccgaaa 3544
Query: 282 actttcttgatatcccgtaagagccatacaaatctttcatctatttgatccttagtgatt 341
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3545 actttcttgatatcccgtaagagccatacaaatctttcatctatttgatccttagtgatt 3604
Query: 342 ctgagtcttccgatatcttctttaccgatgatcatgtataaaattgtaagtggcaactgg 401
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3605 ctgagtcttccgatatcttctttaccgatgatcatgtataaaattgtaagtggcaactgg 3664
Query: 402 tttcttccaacaactccacttttgcttatttcttcaagtagatgataggctacggatgca 461
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3665 tttcttccaacaactccacttttgcttatttcttcaagtagatgataggctacggatgca 3724
Query: 462 ccaatatcttctggaacatttccagcgtcaccgatagcttcagaaaagattctccatcct 521
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 3725 ccaatatcttctggaacatccccagcgtcaccgatagcttcagaaaagattctccatcct 3784
Query: 522 tgtttgttctctgctacgagcgttagaccccaacctggacttttacctgagttttcacct 581
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3785 tgtttgttctctgctacgagcgttagaccccaacctggacttttacctgagttttcacct 3844
Query: 582 ctccatacatctgcagttatatttactttacaactagcagatttaagaactttttttcgc 641
|||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||
Sbjct: 3845 ctccatacatctgcagttatatttacttcacaactagcagatttaagaac-ttttttcgc 3903
Query: 642 accattcatcatgctatttacaaggnaaggactgactcttggggagtatgaaacacctct 701
||||| ||||| |||||||||||| | ||||||||||||| ||||||||||||||||||
Sbjct: 3904 accatcaatcattctatttacaagggagggactgactcttgtggagtatgaaacacctct 3963
Query: 702 tatacttgaaatcattgttttatccaaggcctgcattg 739
|||||||||||||||||||||||||||||| |||||||
Sbjct: 3964 tatacttgaaatcattgttttatccaaggcgtgcattg 4001
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 13,834
Number of Sequences: 1807
Number of extensions: 13834
Number of successful extensions: 76
Number of sequences better than 1.0e-20: 1
length of query: 956
length of database: 10,358,551
effective HSP length: 16
effective length of query: 940
effective length of database: 10,329,639
effective search space: 9709860660
effective search space used: 9709860660
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)