BLASTN 2.2.3 [May-13-2002]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FJ0AC40ZC01FM1.SCF screened BAC_end
         (947 letters)

Database: Klactis 3X assemblage 11/02 
           1807 sequences; 10,358,551 total letters

Searching....done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

3x_Contig1013                                                        1279   0.0  

>3x_Contig1013 
          Length = 5070

 Score = 1279 bits (645), Expect = 0.0
 Identities = 711/729 (97%), Gaps = 3/729 (0%)
 Strand = Plus / Plus

                                                                        
Query: 86   gggtatgagacacctcctaccctgagtcctgatgaattcgccggaatttcgccaacgaag 145
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1386 gggtatgagacacctcctaccctgagtcctgatgaattcgccggaatttcgccaacgaag 1445

                                                                        
Query: 146  caagctttcaagaagatgagattcttcttctcaaggcattggcatgggatggatcaagga 205
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1446 caagctttcaagaagatgagattcttcttctcaaggcattggcatgggatggatcaagga 1505

                                                                        
Query: 206  gaaccagatcattgctattcaactaacaatgatgatcagtcagtgggcaactactcgtgt 265
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1506 gaaccagatcattgctattcaactaacaatgatgatcagtcagtgggcaactactcgtgt 1565

                                                                        
Query: 266  tacaacaagtataagactgacggtcaacaattagaacgtttattcaacgaagctgttgtc 325
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1566 tacaacaagtataagactgacggtcaacaattagaacgtttattcaacgaagctgttgtc 1625

                                                                        
Query: 326  gataaaagaccgcctgtaacaagggacgatgctgtgaggaaaatggcaccatttgaggct 385
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1626 gataaaagaccgcctgtaacaagggacgatgctgtgaggaaaatggcaccatttgaggct 1685

                                                                        
Query: 386  atggaccccagatttgccaacaattggatgaaaaatattcaggactttaacattacattc 445
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1686 atggaccccagatttgccaacaattggatgaaaaatattcaggactttaacattacattc 1745

                                                                        
Query: 446  agtcctgttgatacagaacctagcattgtgatcccttcatcttctgatgttctaaaaacg 505
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1746 agtcctgttgatacagaacctagcattgtgatcccttcatcttctgatgttctaaaaacg 1805

                                                                        
Query: 506  aagatagcgacagcgacagaaaagggtcagcgcgaaggtcagttatctccggacaaccat 565
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1806 aagatagcgacagcgacagaaaagggtcagcgcgaaggtcagttatctccggacaaccat 1865

                                                                        
Query: 566  tccaaatctagtggagtatacagagcattggcaaatcaagctatttcttattgcaactcg 625
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1866 tccaaatctagtggagtatacagagcattggcaaatcaagctatttcttattgcaactcg 1925

                                                                        
Query: 626  ggttcagcgacacagaaatccagtaggtacgaatatggaaatccttctgctttgccagat 685
            |||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||
Sbjct: 1926 ggttcagcgacacagaaatccagtagttacgaatatggtaatccttctgctttgccagat 1985

                                                                        
Query: 686  cttttattcggtttatagagcctaccaacggtctcaggtaaagaatgttc-acaccctcg 744
            || |||| ||||||| |||| ||||||||||||||||||||||| ||||| |||||  ||
Sbjct: 1986 ctcttatacggtttagagagtctaccaacggtctcaggtaaagattgttcaacacctccg 2045

                                                                        
Query: 745  cagggcccttcggtgcaattgattcaggaatgaagaccattttggatttattgacatcgg 804
            ||| |||||||||||||||||||||||| ||  |||| |||||||| ||||||||||| |
Sbjct: 2046 cagtgcccttcggtgcaattgattcagg-atagagacgattttgga-ttattgacatctg 2103

                     
Query: 805  gagggagaa 813
            |||| ||||
Sbjct: 2104 gaggaagaa 2112


  Database: Klactis 3X assemblage 11/02
    Posted date:  Nov 27, 2002 12:23 PM
  Number of letters in database: 10,358,551
  Number of sequences in database:  1807
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5875
Number of Sequences: 1807
Number of extensions: 5875
Number of successful extensions: 26
Number of sequences better than 1.0e-20: 1
length of query: 947
length of database: 10,358,551
effective HSP length: 16
effective length of query: 931
effective length of database: 10,329,639
effective search space: 9616893909
effective search space used: 9616893909
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)