BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC40ZC01RM1.SCF screened BAC_end
(924 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1020 1366 0.0
>3x_Contig1020
Length = 4879
Score = 1366 bits (689), Expect = 0.0
Identities = 828/859 (96%), Gaps = 13/859 (1%)
Strand = Plus / Plus
Query: 47 tgaactttg-aaggtaacgagtttggtcaccctgaatggttggatttccctaacgttaac 105
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2569 tgaactttgcaaggtaacgagtttggtcaccctgaatggttggatttccctaacgttaac 2628
Query: 106 aacggcgatagttaccattatgctagaaggcagttcaacttggtggatgaccctttgttg 165
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2629 aacggcgatagttaccattatgctagaaggcagttcaacttggtggatgaccctttgttg 2688
Query: 166 agataccaatacttgtatcagtttgataaggctatgcaaactactgaaaagaattataaa 225
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2689 agataccaatacttgtatcagtttgataaggctatgcaaactactgaaaagaattataaa 2748
Query: 226 tggttgaatacaccacaagcgtatgtctctttgaaacacgaagttgacaaggtcatcgca 285
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2749 tggttgaatacaccacaagcgtatgtctctttgaaacacgaagttgacaaggtcatcgca 2808
Query: 286 ttcgaaagaaatggactcttgttcatcttcaatttccatccgacagaatccttcacagat 345
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2809 ttcgaaagaaatggactcttgttcatcttcaatttccatccgacagaatccttcacagat 2868
Query: 346 tatcgtattggagttaatgagccaggttgctaccgtatcgtattgaactcagacaagcat 405
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2869 tatcgtattggagttaatgagccaggttgctaccgtatcgtattgaactcagacaagcat 2928
Query: 406 gaatacggtggctgggatcgtatcgatgagtcccaatccaagtattttactactgatttg 465
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2929 gaatacggtggctgggatcgtatcgatgagtcccaatccaagtattttactactgatttg 2988
Query: 466 aaatggaacgaaagatacaatttcatccaggtttacattccaaaccgtaccgcattagtt 525
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2989 aaatggaacgaaagaaacaatttcatccaggtttacattccaaaccgtaccgcattagtt 3048
Query: 526 ctcgcccttgattcaagagtgaggaatggaaattagccaaataatacaaaagcaactgta 585
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3049 ctcgcccttgattcaagagtgaggaatggaaattagccaaataatacaaaagcaactgta 3108
Query: 586 tacctcataccaactaaaccaaagacatagacggaaagaatctcaatttc--aaaaaaaa 643
|||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||
Sbjct: 3109 tacctcataccaactaaaccaaagacatagacggaaagaatctcaattccaaaaaaaaaa 3168
Query: 644 aaaaaaacttaggacaccacacatatgctagctaaccatttcctcaaactattacaatca 703
|||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||
Sbjct: 3169 aaaaaaacttaggacaccacacatatgctagctaacca-ttcctcaaactataacaatca 3227
Query: 704 actccaaaaaatattaaagataaatttaactatttc-aaacatgtatcaattattgcctg 762
|||| |||||||| |||||||||| | ||||| ||| ||||||||||||| || ||||||
Sbjct: 3228 actcaaaaaaataataaagataaaataaactaattcaaaacatgtatcaa-taatgcctg 3286
Query: 763 gcggctcagaaatatcaatct-tacttattatatgaatcctaagttttccattattattg 821
||| ||||| ||||||||||| |||||||||||||||| |||| ||| |||||| ||||
Sbjct: 3287 gcgtctcag-aatatcaatctatacttattatatgaat-ctaatgttttcattataattg 3344
Query: 822 catgatgcacctcagttctaatgtttgattc-ataaaactgtgaggcc-cattaaatgct 879
||||||||| ||||||||||||| |||| || |||||||||||||||| |||||| ||||
Sbjct: 3345 catgatgcagctcagttctaatg-ttgagtcaataaaactgtgaggccacattaattgct 3403
Query: 880 ggnaatataagaatcattt 898
|| ||||| ||||||||||
Sbjct: 3404 ggtaatat-agaatcattt 3421
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 16,865
Number of Sequences: 1807
Number of extensions: 16865
Number of successful extensions: 2247
Number of sequences better than 1.0e-20: 1
length of query: 924
length of database: 10,358,551
effective HSP length: 16
effective length of query: 908
effective length of database: 10,329,639
effective search space: 9379312212
effective search space used: 9379312212
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)