BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC40ZC02FM1.SCF screened BAC_end
(927 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig273 1114 0.0
>3x_Contig273
Length = 1810
Score = 1114 bits (562), Expect = 0.0
Identities = 722/768 (94%), Gaps = 8/768 (1%)
Strand = Plus / Plus
Query: 86 atttacctcttcatgttgttcttccaatgttcttgtttttcatacctatcttatttcaac 145
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 346 atttacctcttcatgttgttcttccaatgttcttgtttttcatacctatcttatttcaac 405
Query: 146 gataccgaatatatatgtcttccggaatatatactgtggtgtttgaagtaaatgacttgg 205
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 406 gataccgaatatatatgtcttccggaatatatactgtggtgtttgaagtaaatgacttgg 465
Query: 206 cagagtgagcgcattttttgtgtgttagcggatatattgaaagtttattactctcatgca 265
||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 466 cagagtgagcgcagtctttgtgtgttagcggatatattgaaagtttattactctcatgca 525
Query: 266 ttggttactcatatataatgagattcaaaaatatgctgcttttatactctcatacttctc 325
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 526 ttggttactcatatataatgagattcaaaaatatgctgcttttatactctcatacttctc 585
Query: 326 ctcttgaagaaatcaaagactcttttggcagtgcttggttcacgttgttctttatgttct 385
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 586 ctcttgaagaaatcaaagactcttttggcagtgcttggttcacgttgttctttatgttct 645
Query: 386 ttacttgcggtaccatcagaactggttatatctttggcagaagaaaccattacagaagaa 445
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 646 ttacttgcggtaccatcagaactggttatatctttggcagaagaaaccattacagaagaa 705
Query: 446 cgattcatacgtttggcagatgcgtctataacttgagaactctttggaggtaacatcgaa 505
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 706 cgattcatacgtttggcagatgcgtctataacttgagaactctttggaggtaacatcgaa 765
Query: 506 tgtctgtaaattgttctgtttgatggattcgatgatactctcggttttgatgtttcgaat 565
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 766 tgtctgtaatttgttctgtttgatggattcgatgatactctcggttttgatgtttcgaat 825
Query: 566 tga-ttatcgaccccgatacgtttctagacggtataccatttcgatttaacagaagaaaa 624
||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 826 tgatttatcgaccccgatacgtttctagacggtatacca-ttcgatttaacagaagaaat 884
Query: 625 ttcttcatttgttttctgggattttgcagatacttcttcttcccccagaagattccgaac 684
| ||||||||||||||| || ||||||||||| ||||||||| |||||||| || || |
Sbjct: 885 tctttcatttgttttctgtgaatttgcagatac-tcttcttccgccagaagagtcggagc 943
Query: 685 tgacactccgctttgaattattataggatgagtaaaaggaatag-aaacttgacctttct 743
|||||||| |||||||||||||||| |||||||||||| |||| ||||| ||||||
Sbjct: 944 tgacactcgtctttgaattattatagtatgagtaaaagg-atagtaaactgaaccttttc 1002
Query: 744 ttttttttggaatgggaatcggctcttgcctttcaagcttgtgaatgattgttttttggg 803
| ||| |||||||| || || |||||||| | | |||||||| |||| | || ||||
Sbjct: 1003 tctttcttggaatgtgagtctgctcttgctatcgaggcttgtgattgatgttgttgtggg 1062
Query: 804 gggtttttttgtaggggttccctttccggtttgctgataggaatgtga 851
|| ||| |||||| |||| || ||||||||||||||||||||||||
Sbjct: 1063 gg---tttctgtaggtgttcgctctccggtttgctgataggaatgtga 1107
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 9189
Number of Sequences: 1807
Number of extensions: 9189
Number of successful extensions: 86
Number of sequences better than 1.0e-20: 1
length of query: 927
length of database: 10,358,551
effective HSP length: 16
effective length of query: 911
effective length of database: 10,329,639
effective search space: 9410301129
effective search space used: 9410301129
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)