BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC40ZC02RM1.SCF screened BAC_end
(914 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig332 642 0.0
3x_Contig798 355 1e-97
>3x_Contig332
Length = 1517
Score = 642 bits (324), Expect = 0.0
Identities = 440/462 (95%), Gaps = 13/462 (2%)
Strand = Plus / Minus
Query: 464 ccgctatgccaagacatatcataccaaagtcagcgtttggacaatcatttgcatgatcag 523
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1514 ccgctatgccaagacatatcataccaaagtcagcgtttggacaatcatttgcatgatcag 1455
Query: 524 agtctgaagtcaataatcgtattagatcccattaccatcggtgaacgtggctcaattgac 583
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1454 agtctgaagtcaataatcgtattagatcccattaccatcggtgaacgtggctcaattgac 1395
Query: 584 gtaaaacttccgattntgaacccgcatattattccgattattgagccatatcagtaccat 643
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1394 gtaaaacttccgattttgaacccgcatattattccgattattgagccatatcagtaccat 1335
Query: 644 gagaaggaagcttttaagaaattggctggcgatccatctcgattcttatcatctctagtg 703
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1334 gagaaggaagcttttaagaaattggctggcgatccatctcgattcttatcatctctagtg 1275
Query: 704 agtaacttgccccataatatcgancaggtgtttcttattcagc-agtatggtggattgcc 762
|||||||||||| |||||||| ||||||| |||| ||||| ||||||||||||||||
Sbjct: 1274 agtaacttgcccataaatatcgacaaggtgttcctta-tcagcaagtatggtggattgcc 1216
Query: 763 gtctgtggataga-atacaaacagccatgtctttgtaaatttgtcacaag-atatcgag- 819
||||||||| ||| |||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 1215 gtctgtggaaagacatacaaacagccatgtctttgtaaatttgtcacaagaatatcgaga 1156
Query: 820 attgagaaacag-tatc-aaatc-attggag-aactagaatctattcaagt-gat-atac 873
|||||||||||| |||| ||||| ||||||| ||||||||||||||||||| ||| ||||
Sbjct: 1155 attgagaaacagttatcaaaatcaattggagaaactagaatctattcaagtggataatac 1096
Query: 874 tgagaggaa-ttggtagaatctctacaa-tatttttgaatca 913
||||| ||| |||||||||||||||||| |||||||||||||
Sbjct: 1095 tgagaagaatttggtagaatctctacaattatttttgaatca 1054
>3x_Contig798
Length = 3073
Score = 355 bits (179), Expect = 1e-97
Identities = 182/183 (99%)
Strand = Plus / Plus
Query: 45 ctttaaactggcagttttctctgatgacttgactcattgataaaactagaataaatgatg 104
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2891 ctttaaactggcagttttctctgatgacttgactcattgataaaactagaataaatgatg 2950
Query: 105 gttttatacactttccatatttgcagataaatggtttgatctcatcatataacgtccaaa 164
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2951 gttttatacactttccatatttgcagataaatggtttgatctcatcatataacgtccaaa 3010
Query: 165 ggcacattttgtgggctagtgctatgatcaaaacatggattaggtgtttgaccacatagg 224
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 3011 ggcacattttgtgggctagtgctatgatcaaaacatggattaggtgtttgaccacagagg 3070
Query: 225 tca 227
|||
Sbjct: 3071 tca 3073
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6216
Number of Sequences: 1807
Number of extensions: 6216
Number of successful extensions: 52
Number of sequences better than 1.0e-20: 2
length of query: 914
length of database: 10,358,551
effective HSP length: 16
effective length of query: 898
effective length of database: 10,329,639
effective search space: 9276015822
effective search space used: 9276015822
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)