BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC40ZC03FM1.SCF screened BAC_end
(955 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig890 1176 0.0
3x_Contig1423 367 e-101
>3x_Contig890
Length = 3684
Score = 1176 bits (593), Expect = 0.0
Identities = 678/697 (97%), Gaps = 7/697 (1%)
Strand = Plus / Minus
Query: 252 ttaaaactctcaaaaattctaaaccaatgacttgttggtcttgttcgaatcgaatagacg 311
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3684 ttaaaactctcaaaaattctaaaccaatgacttgttggtcttgttcgaatcgaatagacg 3625
Query: 312 gtgataactcggccattaactggtatccattaagaacttttcttacaggctatatttata 371
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3624 gtgataactcggccattaactggtatccattaagaacttttcttacaggctatatttata 3565
Query: 372 gataaaataaagtttcatagtagcatctaagtgcatttctctcatgtgtgtttctcgagg 431
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3564 gataaaataaagtttcatagtagcatctaagtgcatttctctcatgtgtgtttctcgagg 3505
Query: 432 ctttctctttaccatggacgaagtacagtaaagagtttcattcagttgattaaggcatgt 491
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3504 ctttctctttaccatggacgaagtacagtaaagagtttcattcagttgattaaggcatgt 3445
Query: 492 ttaccgcgtgagtcgaacacctaaatatgagactcagaggcttaaatgaaaacagtaatt 551
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3444 ttaccgcgtgagtcgaacacctaaatatgagactcagaggcttaaatgaaaacagtaatt 3385
Query: 552 cattatgtaagaggagtatgcgttaagcattggtcatatagtgaagcagtttaagactaa 611
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 3384 cattatgtaagaggagtatgcgttaagcattggtcaaatagtgaagcagtttaagactaa 3325
Query: 612 ccactaccatttctgcgtttagttaacggtttcttttccatttagtaaatgtcattacgt 671
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3324 ccactaccatttctgcgtttagttaacggtttcttttccatttagtaaatgtcattacgt 3265
Query: 672 atttttttctgtcagcatgccaaagtgtaacatttggatatcaaaagaaaaagtttatat 731
||||||||||||||||||| |||||||||| |||||||||||| ||||||||||||||
Sbjct: 3264 atttttttctgtcagcatg-caaagtgtaaacattggatatcaaaggaaaaagtttatat 3206
Query: 732 taagaaacgttaaccgttaaaagcatctgttcatttaaagagcacatatcatagcttgcc 791
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3205 taagaaacgttaaccgttaaaagcatctgttcatttaaagagcacatatcatagcttgcc 3146
Query: 792 tgaattcattggccg-caaagctttcgagaatg-agcttttactatctacattactacgg 849
||||||||||||||| ||||||||||||||||| |||| | ||||||||||||||||| |
Sbjct: 3145 tgaattcattggccgccaaagctttcgagaatgaagctatcactatctacattactac-g 3087
Query: 850 tgggttactaaggttttgggatagcattagcatttcaagatgacttgcttaaaaaagcct 909
| ||||||||| ||||||||||||||||||||||||||||||||||||| |||||| ||
Sbjct: 3086 ttggttactaa-gttttgggatagcattagcatttcaagatgacttgctaaaaaaatgct 3028
Query: 910 cttcaatcaggattctgggcatagaaacagacaatac 946
| |||||||||||||| | ||||||||||||||||||
Sbjct: 3027 c-tcaatcaggattct-gtcatagaaacagacaatac 2993
>3x_Contig1423
Length = 8454
Score = 367 bits (185), Expect = e-101
Identities = 188/189 (99%)
Strand = Plus / Minus
Query: 89 tagttccgttttgttcctggttaattcttttctgagtttatctatctgcgaactaacaat 148
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 189 tagttccgttttgttcctggttaattcttttctgagtttatctatctgcgaactaacaat 130
Query: 149 tggaatatcgcccaaaacgtctttgattggtggtaaatttgcctgctctgcattatcgca 208
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 129 tggaatatcgcccaaaacgtctttgattggtggtaaatttgcctgctctgcattatcgca 70
Query: 209 gctaattggtgcatgcgtggctactacttccatgattaccaagttaaaactctcaaaaat 268
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 69 gctaattggtgcaagcgtggctactacttccatgattaccaagttaaaactctcaaaaat 10
Query: 269 tctaaacca 277
|||||||||
Sbjct: 9 tctaaacca 1
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6508
Number of Sequences: 1807
Number of extensions: 6508
Number of successful extensions: 35
Number of sequences better than 1.0e-20: 2
length of query: 955
length of database: 10,358,551
effective HSP length: 16
effective length of query: 939
effective length of database: 10,329,639
effective search space: 9699531021
effective search space used: 9699531021
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)