BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC40ZC03RM1.SCF screened BAC_end
(936 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1249 1122 0.0
3x_Contig1117 149 1e-35
>3x_Contig1249
Length = 5939
Score = 1122 bits (566), Expect = 0.0
Identities = 583/586 (99%), Gaps = 2/586 (0%)
Strand = Plus / Plus
Query: 44 cttctagagctctcttttgacacatcaattccatacggtcaatgtgttcgttaccaccat 103
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 5354 cttctagagctctcttttgacacaacaattccatacggtcaatgtgttcgttaccaccat 5413
Query: 104 agtatctagcacctggataaccttcagaatacttgttacacattggagttcccaaagcat 163
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5414 agtatctagcacctggataaccttcagaatacttgttacacattggagttcccaaagcat 5473
Query: 164 cgaaaacagaggtagaggtgaagttttcagaagcaatcaagacaatagagtgcttttgtc 223
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5474 cgaaaacagaggtagaggtgaagttttcagaagcaatcaagacaatagagtgcttttgtc 5533
Query: 224 tgtcaatttcatccttgatgatttgttcgacttctggatcactttcagacaagtgagcag 283
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5534 tgtcaatttcatccttgatgatttgttcgacttctggatcactttcagacaagtgagcag 5593
Query: 284 aaaccaagttcttgtgagagtcagatagagcgtatggcatcgttagattattatagttgt 343
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5594 aaaccaagttcttgtgagagtcagatagagcgtatggcatcgttagattattatagttgt 5653
Query: 344 tggttctatccttaatgaagagtagcttggaagagaagaaatactataaacctctaaaac 403
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5654 tggttctatccttaatgaagagtagcttggaagagaagaaatactataaacctctaaaac 5713
Query: 404 aaaacgaataacaaggattccaagataaaacacaattagataaatggtagtccaatatat 463
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5714 aaaacgaataacaaggattccaagataaaacacaattagataaatggtagtccaatatat 5773
Query: 464 atacttgtacacgtttccctctatcaggtatccttcatatttataacgaataaaggattt 523
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5774 atacttgtacacgtttccctctatcaggtatccttcatatttataacgaataaaggattt 5833
Query: 524 cgtaagaacttaatttttttttttttttcaattaaaatttcacagtaacttgatcaaaga 583
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5834 cgtaagaacttaatttttttttttttttcaattaaaatttcacagtaacttgatcaaaga 5893
Query: 584 attatgataattctgaaaaagaaaattactacgtaaataaaatcat 629
||||| |||||||| |||||||||||||||||||||||||||||||
Sbjct: 5894 attat-ataattct-aaaaagaaaattactacgtaaataaaatcat 5937
>3x_Contig1117
Length = 4940
Score = 149 bits (75), Expect = 1e-35
Identities = 141/157 (89%), Gaps = 6/157 (3%)
Strand = Plus / Minus
Query: 708 aaaaaatttgggactggtacttatgtcactgctgctctgctgcgcaacggcagttatagt 767
|||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 4916 aaaaaatttgggactgttacttatgtcactgctgctctgctgcgcaacggcagtaatagt 4857
Query: 768 tacctccagtcatcgg--aaaataacacagggatggttattgta-gagcactac-catag 823
| || ||||||||| |||| ||||||| |||||||| |||| ||||||||| |||||
Sbjct: 4856 accttcaagtcatcggaaaaaaaaacacagtgatggtta-tgtaggagcactacacatag 4798
Query: 824 ntgcatacatttgggtataaatttcg-ggcccacaaa 859
|||||||||||| |||||||||||| ||||||||||
Sbjct: 4797 ttgcatacatttgtgtataaatttcgtggcccacaaa 4761
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 16,906
Number of Sequences: 1807
Number of extensions: 16906
Number of successful extensions: 2312
Number of sequences better than 1.0e-20: 2
length of query: 936
length of database: 10,358,551
effective HSP length: 16
effective length of query: 920
effective length of database: 10,329,639
effective search space: 9503267880
effective search space used: 9503267880
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)