BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC40ZC04FM1.SCF screened BAC_end
(964 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig675 1213 0.0
>3x_Contig675
Length = 2979
Score = 1213 bits (612), Expect = 0.0
Identities = 665/677 (98%), Gaps = 5/677 (0%)
Strand = Plus / Plus
Query: 89 gagatactgattagcatcagcaaattataagaatacacgcatcaaacaagggaacttgca 148
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1677 gagatactgattagcatcagcaaattataagaatacacgcatcaaacaagggaacttgca 1736
Query: 149 ctgatctctgagttgaaaataagatgacgatggaggaaggtgggttcatcagaaggacaa 208
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1737 ctgatctctgagttgaaaataagatgacgatggaggaaggtgggttcatcagaaggacaa 1796
Query: 209 ggcagagcgggaaccggactcgaactgccaagaagaatgtcgtatacattgaatcaagtt 268
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1797 ggcagagcgggaaccggactcgaactgccaagaagaatgtcgtatacattgaatcaagtt 1856
Query: 269 caggtgagtccgaggatgagccattagtaaagaaagaaattaagagcaataagggtaacg 328
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1857 caggtgagtccgaggatgagccattagtaaagaaagaaattaagagcaataagggtaacg 1916
Query: 329 caaaagccaatgacaagggcaagtgcaaaaccaagggcacaactaaggcaaaccgaaatt 388
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1917 caaaagccaatgacaagggcaagtgcaaaaccaagggcacaactaaggcaaaccgaaatt 1976
Query: 389 tggattcggatttagagtatgatgattctttggttctcttatcggatcagacggacagat 448
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1977 tggattcggatttagagtatgatgattctttggttctcttatcggatcagacggacagat 2036
Query: 449 ctggtgatgaatcaagtgatgagctcaaacgtgaacaggtagtcgaactgatatcctctt 508
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2037 ctggtgatgaatcaagtgatgagctcaaacgtgaacaggtagtcgaactgatatcctctt 2096
Query: 509 ctgatgatgatgaacctctgcaaaatggaccgcanaagaagaagagaaaggctaatggta 568
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 2097 ctgatgatgatgaacctctgcaaaatggaccgcaaaagaagaagagaaaggctaatggta 2156
Query: 569 gggctggtggtgccactgctactaagaagaagccgacanaaccc-agatctctccttttc 627
|||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||
Sbjct: 2157 gggctggtggtgccactgctactaagaagaagccgacaaaacccaagatctctcctttcg 2216
Query: 628 aaag-aacacagcaaagttgtatgctcatcattcagaacttatcgatgtgttcaaaaaat 686
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2217 aaagaaacacagcaaagttgtatgctcatcattcagaacttatcgatgtgttcaaaaaat 2276
Query: 687 tacaggaatcgncgataccgcaggtgggaaagagctcctcagccttgatggtatggccat 746
||||||||||| |||||| |||||| |||||||||||||||||| ||||||||||||||
Sbjct: 2277 tacaggaatcgccgatacggcaggt-ggaaagagctcctcagcc-tgatggtatggcca- 2333
Query: 747 ttaaattattacctttt 763
||| |||||||||||||
Sbjct: 2334 ttagattattacctttt 2350
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7211
Number of Sequences: 1807
Number of extensions: 7211
Number of successful extensions: 62
Number of sequences better than 1.0e-20: 1
length of query: 964
length of database: 10,358,551
effective HSP length: 16
effective length of query: 948
effective length of database: 10,329,639
effective search space: 9792497772
effective search space used: 9792497772
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)