BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC40ZC04RM1.SCF screened BAC_end
(924 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig911 1154 0.0
>3x_Contig911
Length = 4722
Score = 1154 bits (582), Expect = 0.0
Identities = 730/761 (95%), Gaps = 14/761 (1%)
Strand = Plus / Minus
Query: 44 ggctggaatatctttacgttggattccagatttaacctgatgtccaattaaagcctcgta 103
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4438 ggctggaatatctttacgttggattccagatttaacctgatgtccaattaaagcctcgta 4379
Query: 104 tgtcaagaaatagacaccacaaccatgcgattccctcaacattgtaggggttaacccgcg 163
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4378 tgtcaagaaatagacaccacaaccatgcgattccctcaacattgtaggggttaacccgcg 4319
Query: 164 catcagttgaccgtttaccctcaatttcttaatacaatcgataggacctttatactctgc 223
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 4318 catcagttgaccgtttaccctcaatttcttaatacaatcgataggacctttaaactctgc 4259
Query: 224 agtcgcaccagaaccagtctgagtctgcaatctaattcttatgtgttcaattggggaggc 283
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4258 agtcgcaccagaaccagtctgagtctgcaatctaattcttatgtgttcaattggggaggc 4199
Query: 284 taaaaacgaattagtgaatccaccagcaacaccacatatgtaatactgaagtaaactcaa 343
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4198 taaaaacgaattagtgaatccaccagcaacaccacatatgtaatactgaagtaaactcaa 4139
Query: 344 atgttgagatgcagcttcatcgaaagtatggaaaaaccgtttcatagcctcgtttacccc 403
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4138 atgttgagatgcagcttcatcgaaagtatggaaaaaccgtttcatagcctcgtttacccc 4079
Query: 404 aaattgtaaggacacacaggcacctacaccaaccaaaggtgtcaaggtacctttatagaa 463
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4078 aaattgtaaggacacacaggcacctacaccaaccaaaggtgtcaaggtacctttatagaa 4019
Query: 464 acccataggaccctcgttcttaatcaaatccttgattactttcactgcatttgtgctagt 523
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4018 acccataggaccctcgttcttaatcaaatccttgattactttcactgcatttgtgctagt 3959
Query: 524 ttcactttgtctgc-atcgaactttagtcgtatcaaaa-gctgtcc-accaaaactttga 580
||||| |||||||| ||||||||||||||||||||||| ||||||| |||||||| ||||
Sbjct: 3958 ttcac-ttgtctgcaatcgaactttagtcgtatcaaaaggctgtccaaccaaaac-ttga 3901
Query: 581 gc-ata-caccagcagtaccagcttaacaatccttgat-acacgagtattatcatgtgga 637
|| ||| ||||||||||||||||| | |||||||||| |||||||||||||||||||||
Sbjct: 3900 gcaataccaccagcagtaccagctaacaaatccttgataacacgagtattatcatgtgga 3841
Query: 638 gactccaaatcgtcaatcaactggggtgttgggaaatncttcagtcatctccga-tagta 696
||||||||||||||||||||||||||||||||| ||| |||||||||||| ||| |||||
Sbjct: 3840 gactccaaatcgtcaatcaactggggtgttggg-aattcttcagtcatcttcgattagta 3782
Query: 697 gaatatgattctggagaaat-gagggaacccaaaggacaaaaaaaattggttcgatcagg 755
| |||||||||||||||||| |||| |||| ||||||||||||||| || | |||||||
Sbjct: 3781 g-atatgattctggagaaatagaggaaaccaaaaggacaaaaaaaagtgatacgatcagc 3723
Query: 756 cgttgaagattcttttattgttggggttaaaagccttctgt 796
| |||||| |||||||||| | | |||||||| |||||||
Sbjct: 3722 cagtgaaga-tcttttattgct-gcgttaaaaggcttctgt 3684
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6773
Number of Sequences: 1807
Number of extensions: 6773
Number of successful extensions: 52
Number of sequences better than 1.0e-20: 1
length of query: 924
length of database: 10,358,551
effective HSP length: 16
effective length of query: 908
effective length of database: 10,329,639
effective search space: 9379312212
effective search space used: 9379312212
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)