BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC40ZC05FM1.SCF screened BAC_end
(934 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1022 1511 0.0
>3x_Contig1022
Length = 4856
Score = 1511 bits (762), Expect = 0.0
Identities = 823/843 (97%), Gaps = 1/843 (0%)
Strand = Plus / Plus
Query: 87 ctatttgaaaggttctttcatcaagtatgttaatttgcaagatgatatcatagacaaggt 146
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1224 ctatttgaaaggttctttcatcaagtatgttaatttgcaagatgatatcatagacaaggt 1283
Query: 147 aaaacaacaatggggtcaaaacagaggcggtaaagacgatagaagaagaaataacaacta 206
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1284 aaaacaacaatggggtcaaaacagaggcggtaaagacgatagaagaagaaataacaacta 1343
Query: 207 caataataacaataattattatcagaatagggatggtaacagaagaggtggtagaagaaa 266
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1344 caataataacaataattattatcagaatagggatggtaacagaagaggtggtagaagaaa 1403
Query: 267 ctatcaaaactcaggtaacagaagggattacaacaacaacaataataataataataataa 326
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1404 ctatcaaaactcaggtaacagaagggattacaacaacaacaataataataataataataa 1463
Query: 327 taataacaatactcacagccataacaatgcaggatctcgtcgttataatattcaaaatag 386
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1464 taataacaatactcacagccataacaatgcaggatctcgtcgttataatattcaaaatag 1523
Query: 387 atcacaatacgatgcatcatccaatccacagctttcgtattcgcaggcgtcaaacaatag 446
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1524 atcacaatacgatgcatcatccaatccacagctttcgtattcgcaggcgtcaaacaatag 1583
Query: 447 taatcaaactccacaattttgatttaacctcttttctcagcatttaattcttaagtattt 506
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1584 taatcaaactccacaattttgatttaacctcttttctcagcatttaattcttaagtattt 1643
Query: 507 gtgtgtctacatggttacatattcaatcacttttattgcggttaaagagactattttgtt 566
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1644 gtgtgtctacatggttacatattcaatcacttttattgcggttaaagagactattttgtt 1703
Query: 567 ggcttggacggtcaaaagtctataaaaacatctgtttcgattgcattcgatgcgatatcc 626
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1704 ggcttggacggtcaaaagtctataaaaacatctgtttcgattgcattcgatgcgatatcc 1763
Query: 627 taaacctttttctcgttactcctttcacacttttgagatttaaaactgaatttgggttat 686
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1764 taaacctttttctcgttactcctttcacacttttgagatttaaaactgaatttgggttat 1823
Query: 687 gaaattaanagaactacctattaattatgattcagagttagtgaaccttaagttcaaagc 746
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1824 gaaattaaaagaactacctattaattatgattcagagttagtgaaccttaagttcaaagc 1883
Query: 747 agtatatcagtgctttatatattaagagtatgtgagcatgggtaccgtggaaaagatcaa 806
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1884 agtatatcagtgctttatatattaagagtatgtgagcatgggtaccgtggaaaagatcaa 1943
Query: 807 atgttgttattttttaaaatactctatac-anaatgcctgggntttaaagtccatgctag 865
|||||||||||||||||| |||||||||| | ||||| ||| | ||||||||||||||
Sbjct: 1944 atgttgttattttttaaattactctatacaaaaatgcttggtttagaaagtccatgctag 2003
Query: 866 atttgcagttttttttaggagaattatgagacttccgaaagaagcgggactttttttttt 925
|| |||||| || | |||||||| ||||||||| | ||| ||| ||||||||||||||
Sbjct: 2004 atatgcagtattatataggagaaatatgagactcctgaagagagccggactttttttttt 2063
Query: 926 tgg 928
|||
Sbjct: 2064 tgg 2066
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 15,083
Number of Sequences: 1807
Number of extensions: 15083
Number of successful extensions: 597
Number of sequences better than 1.0e-20: 1
length of query: 934
length of database: 10,358,551
effective HSP length: 16
effective length of query: 918
effective length of database: 10,329,639
effective search space: 9482608602
effective search space used: 9482608602
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)