BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC40ZC05RM1.SCF screened BAC_end
(895 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1683 1271 0.0
>3x_Contig1683
Length = 16378
Score = 1271 bits (641), Expect = 0.0
Identities = 735/755 (97%), Gaps = 9/755 (1%)
Strand = Plus / Plus
Query: 42 gctttattggtcaattggcatcctgggtcggagcaatgtcctatttctgtgc-agaattc 100
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 5685 gctttattggtcaattggcatcctgggtcggagcaatgtcctatttctgtgccagaattc 5744
Query: 101 cacaattgatcaagaattacaaaaggaagagtactgatgggctttcacccctcctcttta 160
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5745 cacaattgatcaagaattacaaaaggaagagtactgatgggctttcacccctcctcttta 5804
Query: 161 taagtacgttaattgcaaatgtcacatacacactatccattttcaccagttgctcttatc 220
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5805 taagtacgttaattgcaaatgtcacatacacactatccattttcaccagttgctcttatc 5864
Query: 221 tcacagatgaggacaagctaggtttcgtactcaatgcattaccatttatcgtggggagcg 280
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5865 tcacagatgaggacaagctaggtttcgtactcaatgcattaccatttatcgtggggagcg 5924
Query: 281 caggcactgtagtgttcgatttgatctacttctaccaacactacgttttgtacgcggaag 340
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5925 caggcactgtagtgttcgatttgatctacttctaccaacactacgttttgtacgcggaag 5984
Query: 341 actacaacattagaagacttgaatctgacgagttcactccattgatgaatgacggaacgg 400
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5985 actacaacattagaagacttgaatctgacgagttcactccattgatgaatgacggaacgg 6044
Query: 401 tttcccccctatcaaccaattcctattaacaatttctgtgttcttccccacaccaatgtg 460
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6045 tttcccccctatcaaccaattcctattaacaatttctgtgttcttccccacaccaatgtg 6104
Query: 461 cacatatacgtatatattcacagaataattatatgtaatcatttctcgagcttgaaactt 520
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6105 cacatatacgtatatattcacagaataattatatgtaatcatttctcgagcttgaaactt 6164
Query: 521 cgaaaacaccggcactactgaccggtttctcaatgccctgctttgaatatgggaccgatc 580
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6165 cgaaaacaccggcactactgaccggtttctcaatgccctgctttgaatatgggaccgatc 6224
Query: 581 atgtcatttgtcatggagcacaccagtccgtggcacagcgtgactactccatgcccctgg 640
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6225 atgtcatttgtcatggagcacaccagtccgtggcacagcgtgactactccatgcccctgg 6284
Query: 641 actgaaccactgccttttcaaacacgg-attacaccgtgttataagagggcganaagtat 699
||||||||||||||||||||| |||| || ||||||||| |||||||||||| ||||||
Sbjct: 6285 actgaaccactgccttttcaacaacggaataacaccgtgtaataagagggcgaaaagtat 6344
Query: 700 cg-aaaatatcgacacc-ggacctacgttc-agagcat-ggntaaatgaagg-acaaccg 754
|| |||||||||||||| |||| ||||||| ||||||| || ||||||| || |||||||
Sbjct: 6345 cgtaaaatatcgacaccgggacttacgttcaagagcatcggataaatgagggaacaaccg 6404
Query: 755 gtact-acataacaa-tattggtgctactgggtct 787
|||| ||||||||| ||||| |||||||| ||||
Sbjct: 6405 ttactcacataacaattattgttgctactgtgtct 6439
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5734
Number of Sequences: 1807
Number of extensions: 5734
Number of successful extensions: 44
Number of sequences better than 1.0e-20: 1
length of query: 895
length of database: 10,358,551
effective HSP length: 16
effective length of query: 879
effective length of database: 10,329,639
effective search space: 9079752681
effective search space used: 9079752681
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)