BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC40ZC06FM1.SCF screened BAC_end
(975 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig189 1294 0.0
>3x_Contig189
Length = 1476
Score = 1294 bits (653), Expect = 0.0
Identities = 751/773 (97%), Gaps = 8/773 (1%)
Strand = Plus / Plus
Query: 87 taagagtaagtaaaagaagatcc-agagcatagaaattgatttgaaaagcagcataaaac 145
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 79 taagagtaagtaaaagaagatcccagagcatagaaattgatttgaaaagcagcataaaac 138
Query: 146 agtccctcgcgcctcattgcaaggatcttatttcagatcagtgagcctcctttatcgtaa 205
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 139 agtccctcgcgcctcattgcaaggatcttatttcagatcagtgagcctcctttatcgtaa 198
Query: 206 attagatcaccatgttttccagcgttttcaagactggatttcgctcactaaatccattag 265
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 199 attagatcaccatgttttccagcgttttcaagactggatttcgctcactaaatccattag 258
Query: 266 aaagtctgcaagtaaccgctaggcgttttacacatgaatatgctccacgtttcaagaacc 325
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 259 aaagtctgcaagtaaccgctaggcgttttacacatgaatatgctccacgtttcaagaacc 318
Query: 326 agactaagaagcaaaagggtcgtgtgccagtgcgtaccggtggctctactaagggtaatt 385
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 319 agactaagaagcaaaagggtcgtgtgccagtgcgtaccggtggctctactaagggtaatt 378
Query: 386 cgcttcaatttggtcaatttggtttaagattgaagtctgaaggtgtgagacttactgcgt 445
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 379 cgcttcaatttggtcaatttggtttaagattgaagtctgaaggtgtgagacttactgcgt 438
Query: 446 tacagttgaaggaagccgataatgctattatgagatacgttagacctttgaataacggtc 505
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 439 tacagttgaaggaagccgataatgctattatgagatacgttagacctttgaataacggtc 498
Query: 506 aattatggcgtcgtttgtgtacaaacattgctgtttgtatcaagggtaatgagaccagaa 565
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 499 aattatggcgtcgtttgtgtacaaacattgctgtttgtatcaagggtaatgagaccagaa 558
Query: 566 tgggtaaaggtaatggtggatttgaccattggatggtcagagtacccaccggtaaagtga 625
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 559 tgggtaaaggtaagggtggatttgaccattggatggtcagagtacccaccggtaaagtga 618
Query: 626 tctttgagatggcaggtgacaatctacacgagatagtagcacgtgatgcgtttagaaagg 685
||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||| |
Sbjct: 619 tctttgagatggcaggtgacaatctacacgagaaagtagcacgtgaggcgtttagaaa-g 677
Query: 686 gcagc-accaagctttctggcctatacgaattcatatcgaaagattctctgggtaggagt 744
||||| ||||||||| |||||||||||||||||||||||||||||||||| |||| ||||
Sbjct: 678 gcagcaaccaagcttcctggcctatacgaattcatatcgaaagattctct-ggtaagagt 736
Query: 745 aagtattcaagagtggtaaaagatcccaaggacgatccaaagatcaattacttttgaaga 804
| ||| |||||||| ||||||||||| |||||||||||||||||||||||| ||||||||
Sbjct: 737 aggta-tcaagagt-gtaaaagatccaaaggacgatccaaagatcaattac-tttgaaga 793
Query: 805 cctaaggaagaaaccttccaagaattttattacaaagttggaagtcccagcaa 857
|||| |||||||||| | ||| | | |||||||||||| |||||||||||||
Sbjct: 794 actaaagaagaaacctacaaaggaatatattacaaagtt-gaagtcccagcaa 845
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5955
Number of Sequences: 1807
Number of extensions: 5955
Number of successful extensions: 30
Number of sequences better than 1.0e-20: 1
length of query: 975
length of database: 10,358,551
effective HSP length: 16
effective length of query: 959
effective length of database: 10,329,639
effective search space: 9906123801
effective search space used: 9906123801
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)