BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC40ZC06RM1.SCF screened BAC_end
(968 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1442 1292 0.0
>3x_Contig1442
Length = 8270
Score = 1292 bits (652), Expect = 0.0
Identities = 726/744 (97%), Gaps = 6/744 (0%)
Strand = Plus / Minus
Query: 44 cttcctgcgttaactcaaa-ggtgttctggacaggttactatgccaaattaaaaatgaag 102
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 7973 cttcctgcgttaactcaaaaggtgttctggacaggttactatgccaaattaaaaatgaag 7914
Query: 103 aagttccacattccaggtggtgacactctaggtaacattttgttcaagaaggtcagagaa 162
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7913 aagttccacattccaggtggtgacactctaggtaacattttgttcaagaaggtcagagaa 7854
Query: 163 gccaccggtggtcatttaagatttgtgttgaacggtggttccccattgtctatatattca 222
|||||||||||||||||||||||||||||||||||||||||||||||||||| | | ||
Sbjct: 7853 gccaccggtggtcatttaagatttgtgttgaacggtggttccccattgtctagagaagca 7794
Query: 223 caagagtttatcacaaacttgatttgtccaatgttgattggttatggtttgactgaaacc 282
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7793 caagagtttatcacaaacttgatttgtccaatgttgattggttatggtttgactgaaacc 7734
Query: 283 atggctaacacaactatcttacaaccagaacattttgaatacggagtcgctggtgacatt 342
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7733 atggctaacacaactatcttacaaccagaacattttgaatacggagtcgctggtgacatt 7674
Query: 343 gtcggtagtatcactgtcaagttggtcgacgttgaagaattgggctacttcgcaaagaat 402
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7673 gtcggtagtatcactgtcaagttggtcgacgttgaagaattgggctacttcgcaaagaat 7614
Query: 403 tctcaaggtgaagtctggattaaaggtgaacctgtcactcgagaatattacaaaaacgag 462
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7613 tctcaaggtgaagtctggattaaaggtgaacctgtcactcgagaatattacaaaaacgag 7554
Query: 463 gaagagactaagggttctatcacagatgatggctggttcaaaactggtgacattgcggaa 522
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7553 gaagagactaagggttctatcacagatgatggctggttcaaaactggtgacattgcggaa 7494
Query: 523 tggactccaaagggtcaattaaagattattgaccgtanaaagaacttggtgaagactcag 582
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 7493 tggactccaaagggtcaattaaagattattgaccgtaaaaagaacttggtgaagactcag 7434
Query: 583 aatggtgaatacatcgcattagagaagttagaatccgtttacagatcttgtccatttgnt 642
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 7433 aatggtgaatacatcgcattagagaagttagaatccgtttacagatcttgtccatttgtt 7374
Query: 643 c-anacatctgtg-ttacgctgatcaaacaatggttaaacccgtcggtatcattgtttca 700
| | ||||||||| ||||||||||||||||| ||||||||||||||||||||||||| ||
Sbjct: 7373 caaaacatctgtgtttacgctgatcaaacaaaggttaaacccgtcggtatcattgttcca 7314
Query: 701 aatgatgctgccatcaccganaaggctatccagatggatctactgaaaaaagggcg-aga 759
||||| |||||||||||||| ||||||||| |||||||||||||| |||||||||| |||
Sbjct: 7313 aatgaggctgccatcaccgagaaggctatcaagatggatctactg-aaaaagggcgaaga 7255
Query: 760 tgttacccattttgtaccacaatg 783
||||||||| ||||||||||||||
Sbjct: 7254 tgttaccca-tttgtaccacaatg 7232
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7257
Number of Sequences: 1807
Number of extensions: 7257
Number of successful extensions: 34
Number of sequences better than 1.0e-20: 1
length of query: 968
length of database: 10,358,551
effective HSP length: 16
effective length of query: 952
effective length of database: 10,329,639
effective search space: 9833816328
effective search space used: 9833816328
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)