BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC40ZC07FM1.SCF screened BAC_end
(963 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1617 1211 0.0
>3x_Contig1617
Length = 15119
Score = 1211 bits (611), Expect = 0.0
Identities = 682/695 (98%), Gaps = 8/695 (1%)
Strand = Plus / Minus
Query: 86 ccaagaagggcggtgaagcagcagcaaagaaggatggtaaggccgataaacaaccaagag 145
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14759 ccaagaagggcggtgaagcagcagcaaagaaggatggtaaggccgataaacaaccaagag 14700
Query: 146 gtaagccagatgaagaaactttaaagaaattgagagaagaagctaaggcaaagaaggctg 205
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14699 gtaagccagatgaagaaactttaaagaaattgagagaagaagctaaggcaaagaaggctg 14640
Query: 206 ccaagaaggccgccaatgcccaacaagcccaagcaccagcccaagagtctgccaaaccat 265
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14639 ccaagaaggccgccaatgcccaacaagcccaagcaccagcccaagagtctgccaaaccat 14580
Query: 266 ctccaggtgtaattgatttccgtgttggtttcattcaaaaggctatcaagcatccagatg 325
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14579 ctccaggtgtaattgatttccgtgttggtttcattcaaaaggctatcaagcatccagatg 14520
Query: 326 ctgactctctatatgtttctaccatcgatgttggtgatgaagagggtccaagaaccgttt 385
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14519 ctgactctctatatgtttctaccatcgatgttggtgatgaagagggtccaagaaccgttt 14460
Query: 386 gttctggtctagtgaaatacttcccattggaagctatgcaagaacgttatgtcgttgttg 445
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14459 gttctggtctagtgaaatacttcccattggaagctatgcaagaacgttatgtcgttgttg 14400
Query: 446 tttgcaacttaaagccagttaatatgaggggtatcaaatccactgctatggttctttgtg 505
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14399 tttgcaacttaaagccagttaatatgaggggtatcaaatccactgctatggttctttgtg 14340
Query: 506 gttctgatgaaaacaacgtcgaatttgttgaacccccagctggatccaaggctggtgaca 565
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14339 gttctgatgaaaacaacgtcgaatttgttgaacccccagctggatccaaggctggtgaca 14280
Query: 566 aggtgttctttgaaggtttcggcgatgaagaacctataaaacaattgaatccaaaagaag 625
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 14279 aggtgttctttgaaggtttcggcgatgaagaacctataaaacaattgaatcc-aaagaag 14221
Query: 626 atgatttgggaaacatttgc-accacatttcagtactaatgaacaacttgaggttatttt 684
| |||||||| |||| |||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 14220 aagatttggg-aacaattgcaaccacatttcagtactaatgaacaacttgaggttatttt 14162
Query: 685 caaagatgaagatgacaaggctcaacaaatttagaaagctaactaacaaaaaccggggat 744
||| ||||||||||||||||||||||||| |||||||||||||||||||||| ||| |||
Sbjct: 14161 caaggatgaagatgacaaggctcaacaaa-ttagaaagctaactaacaaaaa-cggagat 14104
Query: 745 gcccttaaaagttgctttccattggctaacgcttg 779
| |||| |||||||| ||||||| |||||||||||
Sbjct: 14103 g-ccttcaaagttgc-ttccatt-gctaacgcttg 14072
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 8003
Number of Sequences: 1807
Number of extensions: 8003
Number of successful extensions: 50
Number of sequences better than 1.0e-20: 1
length of query: 963
length of database: 10,358,551
effective HSP length: 16
effective length of query: 947
effective length of database: 10,329,639
effective search space: 9782168133
effective search space used: 9782168133
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)