BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC40ZC07RM1.SCF screened BAC_end
(924 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1423 1394 0.0
>3x_Contig1423
Length = 8454
Score = 1394 bits (703), Expect = 0.0
Identities = 805/833 (96%), Gaps = 6/833 (0%)
Strand = Plus / Plus
Query: 40 acaaccttcaattgctaaaatgaaagccttgattgaaaattttgactacgagtccatcgt 99
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 189 acaagcttcaattgctaaaatgaaagccttgattgaaaattttgactacgagtccatcgt 248
Query: 100 agcgatacaaaaagaatgccaagtcattagagagttcactaataagattagaatgagaat 159
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 249 agcgatacaaaaagaatgccaagtcattagagagttcactaataagattagaatgagaat 308
Query: 160 gattaaacatgattgcattgacatccaaaataatagtgacatttacataaatgaaattat 219
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 309 gattaaacatgattgcattgacatccaaaataatagtgacatttacataaatgaaattat 368
Query: 220 ttcaccgacatggtttgaattcaaaagggaaggtccaaagtattgcgttcattgcgagtg 279
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 369 tccaccgacatggtttgaattcaaaagggaaggtccaaagtattgcgttcattgcgagtg 428
Query: 280 tgtggagactattgaatggcgtaacggtccgtggggtaaagcgactttgtgtaatgcatg 339
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 429 tgtggagactattgaatggcgtaacggtccgtggggtaaagcgactttgtgtaatgcatg 488
Query: 340 tggtttgtggtatcgcaaattgaagaaaaaatttaccgcagaaacaatcagcaataataa 399
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 489 tggtttgtggtatcgcaaattgaagaaaaaatttaccgcag-aacaatcagcaataataa 547
Query: 400 tggaggagaaaagactcttttccaataaacatgataggaaagagttttctaaatttgatg 459
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 548 tggaggagaaaagactcttttccaataaacatgataggaaagagttttctaaatttgatg 607
Query: 460 cagatgataaaagactaaagatcattaaggactcattgattgaccggataaacaaattca 519
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 608 cagatgataaaagactaaagatcattaaggactcattgattgaccggataaacaaattca 667
Query: 520 taaaggaggtagagttatgcaagagtactgctgccaagctaaagcanataaaagcaaaag 579
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 668 taaaggaggtagagttatgcaagagtactgctgccaagctaaagcaaataaaagcaaaag 727
Query: 580 aggatatggatcagatagtgacacctcgggaaataaaacagtacgattcaatttctcgta 639
||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 728 aggatatggatcagaaagtgacacctcgggaaataaacaagtacgattcaatttctcgta 787
Query: 640 tatgttgaatgagcagtttagctgacttc-aaatagattgattggaaaagtttatttcat 698
||||||||||||||||||||||||||||| |||||||||||||||||| |||||| ||||
Sbjct: 788 tatgttgaatgagcagtttagctgacttcaaaatagattgattggaaaggtttatatcat 847
Query: 699 tcaaccagat-tagagctcaaatttttcagttggccagtattcaccagattac-aaccag 756
||||| |||| |||||||||||||||||||||| ||||||| |||||||| || ||||||
Sbjct: 848 tcaacaagatatagagctcaaatttttcagttgcccagtatacaccagataacaaaccag 907
Query: 757 gagtcgcatcattttttcacttaggcattgcaaccgatgacttatttaagttgggaccct 816
|||||||||||||||| |||||| |||||||||| ||||||||||||||||| | |||||
Sbjct: 908 gagtcgcatcatttttccacttaagcattgcaacagatgacttatttaagtttgtaccct 967
Query: 817 aattatcttcacaaaggtttt--caatgataataaaatggtaccatttcatta 867
|| ||||||||||||||||| |||||||||||||| ||| ||||||||||
Sbjct: 968 tatcatcttcacaaaggtttttcaaatgataataaaattgtaacatttcatta 1020
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 8304
Number of Sequences: 1807
Number of extensions: 8304
Number of successful extensions: 52
Number of sequences better than 1.0e-20: 1
length of query: 924
length of database: 10,358,551
effective HSP length: 16
effective length of query: 908
effective length of database: 10,329,639
effective search space: 9379312212
effective search space used: 9379312212
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)