BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC40ZC08FM1.SCF screened BAC_end
(939 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1441 1427 0.0
>3x_Contig1441
Length = 8574
Score = 1427 bits (720), Expect = 0.0
Identities = 799/819 (97%), Gaps = 5/819 (0%)
Strand = Plus / Minus
Query: 87 tgccaattcacataaatattgaacacttacagtaaaactctcacttgaacaatagccagc 146
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8111 tgccaattcacataaatattgaacacttacagtaaaactctcacttgaacaatagccagc 8052
Query: 147 agaacttcggtcatcatacaaagccaaataaccagaaccaacattctgccttaacaatga 206
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8051 agaacttcggtcatcatacaaagccaaataaccagaaccaacattctgccttaacaatga 7992
Query: 207 taaaatgcgacttttaacaacattcaacgacaactttaagcaaaagaattcatttaactt 266
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7991 taaaatgcgacttttaacaacattcaacgacaactttaagcaaaagaattcatttaactt 7932
Query: 267 aaaaagcgaaagagtttcacagatcttaagtgaagacgtttgaacaccatcaaatggtga 326
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7931 aaaaagcgaaagagtttcacagatcttaagtgaagacgtttgaacaccatcaaatggtga 7872
Query: 327 aaactgtaacgctaaaataataccctttaaaagacttctcttactgtcgtcaaaacccaa 386
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7871 aaactgtaacgctaaaataataccctttaaaagacttctcttactgtcgtcaaaacccaa 7812
Query: 387 aacaccaggacctaacatcgccaccaatgcagagacaataaaacaaattactatcccagg 446
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7811 aacaccaggacctaacatcgccaccaatgcagagacaataaaacaaattactatcccagg 7752
Query: 447 attaaacttctgacaataattgttaccaaaagacaaggtactgaatggtccataattatt 506
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7751 attaaacttctgacaataattgttaccaaaagacaaggtactgaatggtccataattatt 7692
Query: 507 acaaaacaaattaacagatatcagctccaacaactcccctgccaaacgaatgtcacaaat 566
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7691 acaaaacaaattaacagatatcagctccaacaactcccctgccaaacgaatgtcacaaat 7632
Query: 567 attatgncttttcaacaaaacaaacaaacatttcaggccactaacattaataacaggatg 626
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7631 attatgctttttcaacaaaacaaacaaacatttcaggccactaacattaataacaggatg 7572
Query: 627 aggatcgctaatgaacttttttacaatatctaacacaacagcatattcactacatccagg 686
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 7571 aggatcgctaatgaacttttttacaatatctaacacaacagcaaattcactacatccagg 7512
Query: 687 atcctcgttcaaaatattatcaatgatgaaaagattccacccacgagatataggattgac 746
||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||
Sbjct: 7511 atcctcgttcaaaatattacaaatgatgaaaagattcaacccacgagatataggattgac 7452
Query: 747 atcacctacaatccctctg-attgacacattgattaaacttttcgaaaac-tttcatctc 804
||||| |||||| |||||| |||||||||||||||||||||||||||||| |||||||||
Sbjct: 7451 atcacttacaat-cctctgaattgacacattgattaaacttttcgaaaacttttcatctc 7393
Query: 805 cagtacgtttaactggagcacaaacaaaaaccaaacagcgtgcctttcaaatcatttaaa 864
||||||||||||||| ||||||||||||| | ||||||||| ||||||||||||| ||||
Sbjct: 7392 cagtacgtttaactgcagcacaaacaaaaccaaaacagcgt-cctttcaaatcatataaa 7334
Query: 865 attatcatcatcaggaaaaggacactcggccaacccatt 903
| |||||||||||| ||||| ||||||| ||||| ||||
Sbjct: 7333 a-tatcatcatcagaaaaagaacactcgtccaacacatt 7296
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7455
Number of Sequences: 1807
Number of extensions: 7455
Number of successful extensions: 50
Number of sequences better than 1.0e-20: 1
length of query: 939
length of database: 10,358,551
effective HSP length: 16
effective length of query: 923
effective length of database: 10,329,639
effective search space: 9534256797
effective search space used: 9534256797
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)