BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC40ZC08RM1.SCF screened BAC_end
(915 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig459 597 e-170
3x_Contig468 278 2e-74
>3x_Contig459
Length = 1510
Score = 597 bits (301), Expect = e-170
Identities = 375/391 (95%), Gaps = 8/391 (2%)
Strand = Plus / Plus
Query: 321 tcttctttatcatctaaagccagtttatttgcaggagttggagttcgttctcttcgaaat 380
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 tcttctttatcatctaaagccagtttatttgcaggagttggagttcgttctcttcgaaat 60
Query: 381 atattccaacctctatgttcattcattgaagacgaacttttagatctgctaaaccccaaa 440
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 atattccaacctctatgttcattcattgaagacgaacttttagatctgctaaaccccaaa 120
Query: 441 atgttgctgaacccgtgaataccatgagaaacgggcttatcagctgtctggttctcataa 500
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 atgttgctgaacccgtgaataccatgagaaacgggcttatcagctgtctggttctcataa 180
Query: 501 tcattatcggaagacgaagtagaattatcttcc-ttatggagtattcagatagntcaggt 559
||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||
Sbjct: 181 tcattatcggaagacgaagtagaattatcttcctttatggagtattcagatagttcaggt 240
Query: 560 ggtctattcatacggacagtgtgtgaaccttccatcatgatgaatgaatgccctga--ga 617
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||
Sbjct: 241 ggtctattcatacggacagtgtgtgaaccttccatcatgatgaatgaatg-cctgagcga 299
Query: 618 ctactgtttcaaaagc-gaatcgttgac-aagaccaaatt-gcaacaagatcttttggtg 674
|||||| ||||||||| ||| ||| ||| ||||||||||| ||||||||| |||||||
Sbjct: 300 ctactggttcaaaagcagaaccgtagacaaagaccaaattagcaacaagagtctttggtg 359
Query: 675 gcacccag-acacacgtcagattgtttcatt 704
||| |||| ||||||||||||||||||||||
Sbjct: 360 gcaaccagaacacacgtcagattgtttcatt 390
>3x_Contig468
Length = 2584
Score = 278 bits (140), Expect = 2e-74
Identities = 166/172 (96%), Gaps = 2/172 (1%)
Strand = Plus / Minus
Query: 51 gcttcacgcaaagaatccatgtcattagtatccgagtcactcgtttcaataggatcat-c 109
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
Sbjct: 182 gcttcacgcaaagaatccatgtcagtagtatccgagtcactcgtttcaataggatcatgc 123
Query: 110 ttttttggtggggctggcactattatcaacaacattttcaaaggaatcttgtaacatcgc 169
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 122 ttttttggtggggctggcactattatcaacaacattt-caaaggaatcttgtaacatcgc 64
Query: 170 ttctaacctatcattagctgaaagaagaagtttttcctccggcgaaatagct 221
|||||||||||||||||||||||||||||||| | ||||||||||||||||
Sbjct: 63 ttctaacctatcattagctgaaagaagaagttatatctccggcgaaatagct 12
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7067
Number of Sequences: 1807
Number of extensions: 7067
Number of successful extensions: 46
Number of sequences better than 1.0e-20: 2
length of query: 915
length of database: 10,358,551
effective HSP length: 16
effective length of query: 899
effective length of database: 10,329,639
effective search space: 9286345461
effective search space used: 9286345461
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)