BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC40ZC09RM1.SCF screened BAC_end
(908 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig324 722 0.0
>3x_Contig324
Length = 1753
Score = 722 bits (364), Expect = 0.0
Identities = 397/407 (97%), Gaps = 1/407 (0%)
Strand = Plus / Plus
Query: 34 taaaaaccttccttactctattcaattgatcatnaatcttcatatctcgttgaccaactt 93
|||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 1348 taaaaagcttccttactctattcaattgatcacaaatcttcatatctcgttgaccaactt 1407
Query: 94 ttttgtggttcaaattgctcaacttgaaaaaacttatgaatcccgccttgaaacctgttg 153
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1408 ttttgtggttcaaattgctcaacttgaaaaaacttatgaatcccgccttgaaacctgttg 1467
Query: 154 cattattttgcagatgcttggtttttctcgttacaaaaactcttctattgatctattcca 213
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1468 cattattttgcagatgcttggtttttctcgttacaaaaactcttctattgatctattcca 1527
Query: 214 tttctttactgattcgggctcgactatatctccacatttaccgtcgttcatagaatcggc 273
||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1528 agcaactactgattcgggctcgactatatctccacatttaccgtcgttcatagaatcggc 1587
Query: 274 tctgataaattccattctgtcgccggaatctcggaagtttgaaatttcatggaaaaatgc 333
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1588 tctgataaattccattctgtcgccggaatctcggaagtttgaaatttcatggaaaaatgc 1647
Query: 334 tagcgaaaagcttggtaatacaacttccttaaaaagtgtttacanatatcttggactgtg 393
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 1648 tagcgaaaagcttggtaatacaacttccttaaaaagtgtttaca-atatcttggactgtg 1706
Query: 394 tggatgcaagtatcaaaaaatttattgaatttgatggaattgctcct 440
|||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1707 tggatgcaagtatcaaaaaatttattgaatttgatggaattgctcct 1753
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 8300
Number of Sequences: 1807
Number of extensions: 8300
Number of successful extensions: 55
Number of sequences better than 1.0e-20: 1
length of query: 908
length of database: 10,358,551
effective HSP length: 16
effective length of query: 892
effective length of database: 10,329,639
effective search space: 9214037988
effective search space used: 9214037988
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)