BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC40ZC10FM1.SCF screened BAC_end
(996 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1784 1174 0.0
>3x_Contig1784
Length = 28126
Score = 1174 bits (592), Expect = 0.0
Identities = 632/640 (98%), Gaps = 4/640 (0%)
Strand = Plus / Minus
Query: 85 tacaacgtttgaatttaccggaaaattcacagtattcagcaggaaagtcacacacaccac 144
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14483 tacaacgtttgaatttaccggaaaattcacagtattcagcaggaaagtcacacacaccac 14424
Query: 145 agtatataacgttagtgagaggcattctgtatattcttctgtctctttaattaattctaa 204
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14423 agtatataacgttagtgagaggcattctgtatattcttctgtctctttaattaattctaa 14364
Query: 205 cgtataaatctcaaactgaatcaagcgtaacttaattacacgtaatgttattctgaacac 264
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14363 cgtataaatctcaaactgaatcaagcgtaacttaattacacgtaatgttattctgaacac 14304
Query: 265 acctcatctcatgcattagtgattttctgtttcaatatttttttcaatatttcactgtaa 324
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14303 acctcatctcatgcattagtgattttctgtttcaatatttttttcaatatttcactgtaa 14244
Query: 325 agatcgattcactttcttcagtaactacgtaatctactacttacatatactaagtgttta 384
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14243 agatcgattcactttcttcagtaactacgtaatctactacttacatatactaagtgttta 14184
Query: 385 cttagacatgcacaaatagcggcgaactttggttacactcacactgaatacacttctttg 444
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14183 cttagacatgcacaaatagcggcgaactttggttacactcacactgaatacacttctttg 14124
Query: 445 gaatggcaacgtatgatgattttgctactgatactgtaataataacgtcaaagacaaagg 504
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14123 gaatggcaacgtatgatgattttgctactgatactgtaataataacgtcaaagacaaagg 14064
Query: 505 acgtgtgctccaagcccttgtttgatgagatcgtaaataaggtgcaagaatgtgtggtgg 564
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14063 acgtgtgctccaagcccttgtttgatgagatcgtaaataaggtgcaagaatgtgtggtgg 14004
Query: 565 atacttgacagatttacggtgcggatgccgtgcgtgtcattacacttcctggattcaaga 624
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14003 atactcgacagatttacggtgcggatgccgtgcgtgtcattacacttcctggattcaaga 13944
Query: 625 gaatattggt-acatcgcctaatattgaagcgagccgtggagtgaaatccttgaacccca 683
|||||||||| ||||||||||||||||| |||||||||| ||||||||||||||| ||||
Sbjct: 13943 gaatattggtaacatcgcctaatattgaggcgagccgtgaagtgaaatccttgaa-ccca 13885
Query: 684 ttattccctgatttgtaaatttggggttcttcatcacgaa 723
||||||||||| |||||||||| ||||||| |||||||||
Sbjct: 13884 ttattccctga-ttgtaaattt-gggttctccatcacgaa 13847
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6967
Number of Sequences: 1807
Number of extensions: 6967
Number of successful extensions: 63
Number of sequences better than 1.0e-20: 1
length of query: 996
length of database: 10,358,551
effective HSP length: 16
effective length of query: 980
effective length of database: 10,329,639
effective search space: 10123046220
effective search space used: 10123046220
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)