BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC40ZC10RM1.SCF screened BAC_end
(930 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1375 1388 0.0
>3x_Contig1375
Length = 6996
Score = 1388 bits (700), Expect = 0.0
Identities = 776/795 (97%), Gaps = 5/795 (0%)
Strand = Plus / Minus
Query: 44 cttttggtagttttcagtgacgactgtctggaatgcttcaaatgggtatgattactaccc 103
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1009 cttttggtagttttcagtgacgactgtctggaatgcttcaaatgggtatgattactaccc 950
Query: 104 tgaagtaaacaagaaagctcactaaagcttgttttcttctgtgttgtgttcatcgattcc 163
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 949 tgaagtaaacaagaaagctcactaaagcttgttttcttctgtgttgtgttcatcgattcc 890
Query: 164 atccatgctgtttctcttgttgtatgtcaaaatgagtatctcttaatggtacacttaaaa 223
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 889 atccatgctgtttctcttgttgtatgtcaaaatgagtatctcttaatggtacacttaaaa 830
Query: 224 tgaaacgcacgttgtcaaaagtataagtcataccaatgccaattagaaactagttgttca 283
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 829 tgaaacgcacgttgtcaaaagtataagtcataccaatgccaattagaaactagttgttca 770
Query: 284 ccagtttatatatatatatatgcgagcaacatttgtaccctgtgtccaacaatcccttta 343
||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||
Sbjct: 769 ccagtttatatatatatctccgcgagcaacatttgtaccctgtgtccaacaatcccttta 710
Query: 344 aattatctgggcaattgatccacgaattcaatgcaccgcatataatttggtgataactaa 403
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 709 aattatctgggcaattgatccacgaattcaatgcaccgcatataatttggtgataactaa 650
Query: 404 tagaaggagatgcagggcccttattctcgtgatgaaatttttccctacattttttttgtc 463
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 649 tagaaggagatgcagggcccttattctcgtgatgaaatttttccctacattttttttgtc 590
Query: 464 aatttcaaaacgtaatggataagagatgaacacgaacatacacagatgaagataacatca 523
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 589 aatttcaaaacgtaatggataagagatgaacacgaacatacacagatgaagataacatca 530
Query: 524 gatctgatcgaagtcaaccaactgctgattgatatagcaacccatttttattgntccctt 583
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||
Sbjct: 529 gatctgatcgaagtcaaccaactgctgattgatatagcaacccatttttattgttcc-tt 471
Query: 584 gatt-actgccattaacgtcctagttttgccctgaaggaaagtttcacagttcaactggt 642
|||| |||||||||||||||||||||||||||||| |||||||| ||||||||||||||
Sbjct: 470 gatttactgccattaacgtcctagttttgccctgagggaaagttcaacagttcaactggt 411
Query: 643 acgtttgtagtaaaagccataatcaaaggga-gttaccactacaattgattctacgcctg 701
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 410 acgtttgtagtaaaagccataatcaaagggaggttaccactacaattgattctacgcctg 351
Query: 702 atctgttcctacctgattacgatcaagccaaacttttcaagcattttcgtcgccatatgt 761
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 350 atctgttcctacctgataacgatcaagccaaacttttcaagcattttcgtcgccatatgt 291
Query: 762 cctgtggttcctcttcgattaaatcatttcttgcgattaagaaaaaaaaaaa-tagaaat 820
|||||||||||||| || ||||||||||||||||| | |||||||||||| |||||||
Sbjct: 290 cctgtggttcctctcgaatcaaatcatttcttgcgataaggaaaaaaaaaaagtagaaat 231
Query: 821 attggtgaagtgaga 835
| |||||||||||||
Sbjct: 230 a-tggtgaagtgaga 217
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 16,539
Number of Sequences: 1807
Number of extensions: 16539
Number of successful extensions: 1080
Number of sequences better than 1.0e-20: 1
length of query: 930
length of database: 10,358,551
effective HSP length: 16
effective length of query: 914
effective length of database: 10,329,639
effective search space: 9441290046
effective search space used: 9441290046
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)