BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC40ZC11FM1.SCF screened BAC_end
(952 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1648 1152 0.0
>3x_Contig1648
Length = 16375
Score = 1152 bits (581), Expect = 0.0
Identities = 624/636 (98%), Gaps = 2/636 (0%)
Strand = Plus / Minus
Query: 87 ctcacattctgcagggttgatcaacagtttaatttggattgaagtgaaatttggaacagc 146
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8592 ctcacattctgcagggttgatcaacagtttaatttggattgaagtgaaatttggaacagc 8533
Query: 147 agcaacttttctctttgttactgggaaagtagatctattgttaactagagccacttcaaa 206
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8532 agcaacttttctctttgttactgggaaagtagatctattgttaactagagccacttcaaa 8473
Query: 207 agctttgattctatttttaagggcaatcttcacgatgttcgatactttattgcagatgaa 266
|||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8472 agctttgattctatcctcaagggcaatcttcacgatgttcgatactttattgcagatgaa 8413
Query: 267 attttcgaatgatataaagctaatcttttcaacgggaccgaacttggacagtagtaaatt 326
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8412 attttcgaatgatataaagctaatcttttcaacgggaccgaacttggacagtagtaaatt 8353
Query: 327 gatggatgggatatctaaatcatagtaagcatcatatttcactgtcttgatcttgtttaa 386
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8352 gatggatgggatatctaaatcatagtaagcatcatatttcactgtcttgatcttgtttaa 8293
Query: 387 gttagttaagaacatgttttcgaactgatctctgacgacgtcattcaacatcaataaact 446
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8292 gttagttaagaacatgttttcgaactgatctctgacgacgtcattcaacatcaataaact 8233
Query: 447 ttcttgcgcgtagatctttagcatttgatagctgttaacagacattttactcagtatgtt 506
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8232 ttcttgcgcgtagatctttagcatttgatagctgttaacagacattttactcagtatgtt 8173
Query: 507 aactttggtggttttatcaaagattgtaggtgtttggaaaccttcttcaacgtattttga 566
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8172 aactttggtggttttatcaaagattgtaggtgtttggaaaccttcttcaacgtattttga 8113
Query: 567 ggaagtgacagttgcagtagtgctatagtcggaatagaattgtaagtacccatcagtaca 626
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8112 ggaagtgacagttgcagtagtgctatagtcggaatagaattgtaagtacccatcagtaca 8053
Query: 627 tagatccatggtggccaaatatttgattacaccctttgaattattggtangatgagaacc 686
|||||||| ||||||||||||||||||||| ||||||||| ||||||| ||||||||||
Sbjct: 8052 aagatccattgtggccaaatatttgattaca-cctttgaataattggtaagatgagaacc 7994
Query: 687 catgcaataaaattttggttccatttcaacccacca 722
|||||||||||||| || | ||| ||||||||||||
Sbjct: 7993 catgcaataaaattctgttacca-ttcaacccacca 7959
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7916
Number of Sequences: 1807
Number of extensions: 7916
Number of successful extensions: 42
Number of sequences better than 1.0e-20: 1
length of query: 952
length of database: 10,358,551
effective HSP length: 16
effective length of query: 936
effective length of database: 10,329,639
effective search space: 9668542104
effective search space used: 9668542104
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)