BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC40ZC11RM1.SCF screened BAC_end
(955 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1637 696 0.0
3x_Contig790 369 e-102
>3x_Contig1637
Length = 14855
Score = 696 bits (351), Expect = 0.0
Identities = 396/410 (96%), Gaps = 1/410 (0%)
Strand = Plus / Minus
Query: 313 ttatgagcaggaatttgcagatcgtcatcaaaagtgaactggaagtcaaaattattaaca 372
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14854 ttatgagcaggaatttgcagatcgtcatcaaaagtgaactggaagtcaaaattattaaca 14795
Query: 373 atatcatcattcattaacgatgaaaggtgcgaggcaaacggttgcttgacatcaactgcc 432
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14794 atatcatcattcattaacgatgaaaggtgcgaggcaaacggttgcttgacatcaactgcc 14735
Query: 433 ttagatatatcgtattttagtaaaatgttacgaatggaatcagtcaaggcaccatatatg 492
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 14734 ttagatatatcgtattttagtaaaatgttacgaatggaatcagtcaaggcaccataaatg 14675
Query: 493 catctagcaccttcgtatctatctctatcgcatacagaacctcttcgtagtaac-aattt 551
|||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||
Sbjct: 14674 catctagcaccttcgtatctatctctatcgcaaacagaacctcttcgtagtaacaaattt 14615
Query: 552 acaacatcttcatgaccacattagctggctaaaaataatggcgaattgtcaaactcatct 611
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 14614 acaacatcttcatgaccacataagctggctaaaaataatggcgaattgtcaaactcatct 14555
Query: 612 acaccgttgacattaactccagtagaaaataatcgatctgcatttctaacatcgnctatt 671
|||||||||||||||||||||||||||| ||||||||||||||| ||||||| ||||
Sbjct: 14554 acaccgttgacattaactccagtagaaattaatcgatctgcattctcaacatcgcctatc 14495
Query: 672 ctacaaagcaaacacaacttcaagaaattcttattctgatttagcagtgg 721
|||||| |||||||||| ||||||||||||||||||||||||||||||
Sbjct: 14494 ctacaagcaaaacacaactccaagaaattcttattctgatttagcagtgg 14445
>3x_Contig790
Length = 4570
Score = 369 bits (186), Expect = e-102
Identities = 274/302 (90%), Gaps = 1/302 (0%)
Strand = Plus / Minus
Query: 44 gcttgccctctctgatgggtcatttacgtgcatgngttttatcaaggtacgataggagat 103
|||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||
Sbjct: 312 gcttgccctctctgatgggtcagatacgtgcatg-gttttatcaaggtacgataggagat 254
Query: 104 ccggaaatcccgacttcatagataggaggtggatatgttttaattggtcttgctttaatt 163
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 253 ccggaaatcccgacttcatagataggaggtggatatgttttacttggtcttgctttaatt 194
Query: 164 catgtaagacaggtactaaataaatgaacttcaatattgaacggaacgcctctatttttg 223
||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||
Sbjct: 193 catgtaagacaggtactaaataaatgaacttcaatattgaacggaacgcctctatatctg 134
Query: 224 ttccggtaggcattctcttggatttcaatgttgcccatggaccactgaatttctgcctga 283
|||||||||||||||||| ||||||||||| |||||| |||||| ||||||| ||| |
Sbjct: 133 acccggtaggcattctcttgtatttcaatgtttcccatgtaccacttaatttcttcctta 74
Query: 284 aataacttgatcgtgccgccagtataaacttatgagcaggaatttgcagatcgtcatcaa 343
|||||| ||| | || ||| ||||||||||| | || ||||| || ||| |||||||
Sbjct: 73 tttaactttatctttcctccattataaacttattatcattaattttcatatcttcatcaa 14
Query: 344 aa 345
||
Sbjct: 13 aa 12
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7588
Number of Sequences: 1807
Number of extensions: 7588
Number of successful extensions: 50
Number of sequences better than 1.0e-20: 2
length of query: 955
length of database: 10,358,551
effective HSP length: 16
effective length of query: 939
effective length of database: 10,329,639
effective search space: 9699531021
effective search space used: 9699531021
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)