BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC40ZC12RM1.SCF screened BAC_end
(949 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1780 912 0.0
>3x_Contig1780
Length = 27883
Score = 912 bits (460), Expect = 0.0
Identities = 630/676 (93%), Gaps = 8/676 (1%)
Strand = Plus / Plus
Query: 39 acaaccttgagcggattatcggctacggtggtgatcgaagagcacacccacacatacctt 98
|||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 25108 acaagcttgagcggattatcgcctacggtggtgatcgaagagcacacccacacatacctt 25167
Query: 99 cacacaaagcaaggcactgtcgatcgtatcacaaatatgagaataatgaaaaaataaaaa 158
|||||||||||||||||| ||||||||||||||||| ||||||||| |||||||||||||
Sbjct: 25168 cacacaaagcaaggcact-tcgatcgtatcacaaat-tgagaataa-gaaaaaataaaaa 25224
Query: 159 aaaaaaagtcaactacaaccactctcgtctccagggcaaagcacaaaatcattactgcta 218
|||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||
Sbjct: 25225 aaaaaaagtcaactacaaccactctcgtctccagggcaaagcacaaaatc-ttcctgcta 25283
Query: 219 cagtatgttacaaggcaaaaaaatatgagatcagaacgaaaatagtaaaaaccgaaagag 278
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 25284 cagtatgttagaaggcaaaaaaatatgagatcagaacgaaaatagtaaaaaccgaaagag 25343
Query: 279 ttaaaaagctgtaaaactagtaaaacaagcaaaactagctggaattctttcaatgtatgg 338
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||
Sbjct: 25344 ttaaaaagctgtaaaactagtaaaacaagcaaaactagctggaattctttcgatgtaggg 25403
Query: 339 tttcaggtatacagattggatcgaactttgactgttctttctatttcaaactgatactaa 398
||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||
Sbjct: 25404 tttcaggtatacagattggatcgtactttgactgttctttctatttcaaactgagactag 25463
Query: 399 cgcatggtggtttatatgcctctttactagatctcgggtttcggtggtgctgaaggttgc 458
||||||||||||||| || || |||||||| | |||||||||||||||||||||||||||
Sbjct: 25464 cgcatggtggtttatttgtctttttactagttttcgggtttcggtggtgctgaaggttgc 25523
Query: 459 tccttgtatgtgtgaaaaagagaaacgaaaactgacataggtcttgatatcttattcaca 518
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 25524 tccttgtatgtgtgaaaaagagaaacgaaaactgagataggtcttgatatcttattcaca 25583
Query: 519 atcgaatctacggcaaaattatcatggggtcgacttatattgtgactgttccctatgaac 578
||||||| || ||||||||||||||||||||| |||||||||||||| |||||||| ||
Sbjct: 25584 atcgaatttagggcaaaattatcatggggtcgccttatattgtgacttttccctatttac 25643
Query: 579 tgtgtgatcgtatttttaaagttagagttagccctatactagcatccg-gctattttggt 637
||||| || ||||||||||||| |||||||||||||||| |||||| |||||||| |
Sbjct: 25644 tgtgtaattttatttttaaagtttgagttagccctatact-ccatccgtgctattttttt 25702
Query: 638 tctcgaactgc-tatcggcaca-gaacattgtagcccagggtgaccttaagaatgcattt 695
||||||||||| |||||||| | ||||| || | ||||||||| ||||||| | |||||
Sbjct: 25703 tctcgaactgcttatcggcaaaggaacaaggtggtccagggtgatcttaagagtacattt 25762
Query: 696 taatttttttttttgc 711
| |||||||||||||
Sbjct: 25763 aattttttttttttgc 25778
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 18,973
Number of Sequences: 1807
Number of extensions: 18973
Number of successful extensions: 1591
Number of sequences better than 1.0e-20: 1
length of query: 949
length of database: 10,358,551
effective HSP length: 16
effective length of query: 933
effective length of database: 10,329,639
effective search space: 9637553187
effective search space used: 9637553187
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)