BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC40ZD01RM1.SCF screened BAC_end
(927 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1758 924 0.0
>3x_Contig1758
Length = 25930
Score = 924 bits (466), Expect = 0.0
Identities = 479/482 (99%), Gaps = 1/482 (0%)
Strand = Plus / Minus
Query: 44 ctttagttaattctgtcttaccgtgtaccagtaggtcccaaaaacatgaaactagcaata 103
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 481 ctttagttaattctgtcttaccg-gtaccagtaggtcccaaaaacatgaaactagcaata 423
Query: 104 ggtctcttttcactggtcaatccagctctttgtaaacgcactgcgtcacttatagcatcg 163
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 422 ggtctcttttcactggtcaatccagctctttgtaaacgcactgcgtcacttatagcatcg 363
Query: 164 attgcttcatcttgaccaacaactctttctcttaatgaattctgcatatatagtattttg 223
||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||
Sbjct: 362 attgcttcatcttgaccaacaactctttctcttaatgaattctgcatatatagtaatctg 303
Query: 224 tccttatcacctttcaaaacggtttccattggaatacctgtcatcttggcaatgacttta 283
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 302 tccttatcacctttcaaaacggtttccattggaatacctgtcatcttggcaatgacttta 243
Query: 284 gaaatgtcatcagaggtaacagagtcatgtaacaagttgttttcagtatccttcttgctg 343
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 242 gaaatgtcatcagaggtaacagagtcatgtaacaagttgttttcagtatccttcttgctg 183
Query: 344 ttcagtgctacttttctttccaattcagggatcttggcatatcttagttcagaagccttg 403
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 182 ttcagtgctacttttctttccaattcagggatcttggcatatcttagttcagaagccttg 123
Query: 404 gcataatcaccttctctttgacaaatatccaattcggttctcaacttatctaaatcttcc 463
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 122 gcataatcaccttctctttgacaaatatccaattcggttctcaacttatctaaatcttcc 63
Query: 464 ttggcagtcttgatggaatccaattcagatttttcggtttcccaaatttcagtcaacctc 523
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 62 ttggcagtcttgatggaatccaattcagatttttcggtttcccaaatttcagtcaacctc 3
Query: 524 tc 525
||
Sbjct: 2 tc 1
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 8533
Number of Sequences: 1807
Number of extensions: 8533
Number of successful extensions: 53
Number of sequences better than 1.0e-20: 1
length of query: 927
length of database: 10,358,551
effective HSP length: 16
effective length of query: 911
effective length of database: 10,329,639
effective search space: 9410301129
effective search space used: 9410301129
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)